Plant FIBer expression Database

Lus10027176 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21710 44 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039666
[exp]
219 / 3e-73 AT3G21710 77 / 9e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G151900
[exp]
65 / 4e-13 AT3G21710 110 / 2e-30 unknown protein
Potri.002G230300
[exp]
64 / 1e-12 AT3G21710 98 / 1e-25 unknown protein
Potri.001G419400
[exp]
55 / 2e-09 AT3G21710 70 / 1e-14 unknown protein
PFAM info
Representative CDS sequence
>Lus10027176 pacid=23145429 polypeptide=Lus10027176 locus=Lus10027176.g ID=Lus10027176.BGIv1.0 annot-version=v1.0
ATGGATGAACAAGAGGAGAGTGGTTGGACTGGCTACTTTGAAGACTTTTGTCATGAAGATGATGATGATGGTGATCAACAAGCATCAATGAGCTTGTGTA
GCTCTTCCATGGTCTCTGATGCTTCTTCTCTTCCTGCAAGGAACATTAATGACGGCATCAATTCATCTCTTCCTCTTCATCAACAACAACAACATCATCA
CATTCTGTACAGTCAAAATTCAGTCCCAAAGAAGCTCAATTTCAAGAAGAAGAGTACTCATCACATGATCTCCAACCACCACCATGATGATCCCCTTGAA
GACACTGCTAGCTCTCCTGTTAACAGCCCCAAGGTTTTTGATTACAGGCAGATGGAGATGAACTCTAAGATGATGATGGCAACGAGTGGTAATTACAATA
CTAGTCACATTGGTCCTTTCAGCAGCACAACTACTTCTATGGGGAATAATACTAAGGAAGAGGAAGAAATGAGAATGGGGTTTAATGAAGAGGAGAAAGA
GTGCACAGAGTTGAAGAAGAAAGGGCTTTGCTTAGTTCCAATGTCCATGCTTCTTCACTATGTTGGCTAA
AA sequence
>Lus10027176 pacid=23145429 polypeptide=Lus10027176 locus=Lus10027176.g ID=Lus10027176.BGIv1.0 annot-version=v1.0
MDEQEESGWTGYFEDFCHEDDDDGDQQASMSLCSSSMVSDASSLPARNINDGINSSLPLHQQQQHHHILYSQNSVPKKLNFKKKSTHHMISNHHHDDPLE
DTASSPVNSPKVFDYRQMEMNSKMMMATSGNYNTSHIGPFSSTTTSMGNNTKEEEEMRMGFNEEEKECTELKKKGLCLVPMSMLLHYVG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21710 unknown protein Lus10027176
[exp]
0 1
AT5G59790 Domain of unknown function (DU... Lus10005887
[exp]
2.4 0.9401
AT5G40830 ATRAD3, ATATR S-adenosyl-L-methionine-depend... Lus10012158
[exp]
5.1 0.9454
AT4G00080 UNE11 unfertilized embryo sac 11, Pl... Lus10001988
[exp]
5.7 0.9401
AT5G35700 FIM2, FIM5 FIMBRIN5, fimbrin-like protein... Lus10012361
[exp]
7.4 0.9349
AT5G06580 FAD-linked oxidases family pro... Lus10015987
[exp]
13.3 0.9110
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Lus10001637
[exp]
13.4 0.9406
AT2G43870 Pectin lyase-like superfamily ... Lus10002124
[exp]
15.7 0.9366
AT2G34790 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST ... Lus10036147
[exp]
16.9 0.8789
AT1G30440 Phototropic-responsive NPH3 fa... Lus10038531
[exp]
17.0 0.9247
AT1G68150 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1... Lus10035971
[exp]
18.0 0.9395

Lus10027176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.