Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 57 / 6e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 45 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64065 43 / 4e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 39 / 0.0007 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039664 [exp] 345 / 9e-123 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 197 / 2e-63 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 172 / 3e-54 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 134 / 1e-39 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 129 / 1e-37 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 128 / 2e-37 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 126 / 2e-36 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 122 / 4e-35 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 109 / 7e-30 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 110 / 1e-30 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 89 / 3e-22 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 60 / 2e-11 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 53 / 1e-08 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218400 [exp] 39 / 0.0006 AT3G44380 229 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 39 / 0.0006 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10027177 pacid=23145412 polypeptide=Lus10027177 locus=Lus10027177.g ID=Lus10027177.BGIv1.0 annot-version=v1.0 ATGACAGCCCAAAGAAACTCAGTTCTCAGAATCTGCTGCATATCAGCGACGGCAGTAATCGTCGTCACTACAATCATCGTAATAACCCTAGCCTTCACGG TCTTCAAACCCCGCGACCCGGAAGTGGTCCTCTACCCGGTCGGACTTGCCAAAGTCCAGCTCGAGGACTTCATCACAAACGACACGGTCACGAGCGACAT GGTCATGAGCATCCGCAACGAAAACTACGCGAGCTTCGAGTTCCGGAACGCAACCAGCCACATCAAGTACGATGGGAAGCTCGTGGGCCGGGTTCCGGTC CTCGAAGGTGTTGTACCGGCACGGTCCACGATGAATGTGACATCTCCGGCCGTGTTGAGGGCCAAGAGGCTGAGAGATGACCCTAAGGCGATTAGTGATA TTATTGATGGGATGTTGAATTTGACCGCGACGGTTACCATGCATGGTAAGATGAGGATGGTTAAGGGTTTGGTTAAGAGGAGAGGTTCGGTTTATATCGA GTGTCACATGACGATTTATGTGGGTGAGACCCCAATTCGTGGCGATTCGTGGTGTTGGACTAAGCTTGAGATGTGA
AA sequence Show only first row Show all	>Lus10027177 pacid=23145412 polypeptide=Lus10027177 locus=Lus10027177.g ID=Lus10027177.BGIv1.0 annot-version=v1.0 MTAQRNSVLRICCISATAVIVVTTIIVITLAFTVFKPRDPEVVLYPVGLAKVQLEDFITNDTVTSDMVMSIRNENYASFEFRNATSHIKYDGKLVGRVPV LEGVVPARSTMNVTSPAVLRAKRLRDDPKAISDIIDGMLNLTATVTMHGKMRMVKGLVKRRGSVYIECHMTIYVGETPIRGDSWCWTKLEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	0	1
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	1.7	1.0000
					Lus10026928 [exp]	2.0	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	2.4	1.0000
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	3.0	1.0000
					Lus10035046 [exp]	3.5	0.9238
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	4.9	0.9631
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	5.0	0.9881
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	5.5	0.9854
					Lus10007677 [exp]	5.7	0.8964
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	5.9	0.9699

Compare expression of checked genes

Lus10027177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.