Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039662 [exp] 210 / 2e-69 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 209 / 5e-69 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039663 [exp] 156 / 1e-49 ND / Lus10031554 [exp] 142 / 5e-43 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 127 / 5e-37 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 126 / 1e-36 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 124 / 8e-36 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 107 / 1e-28 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 91 / 2e-22 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 77 / 8e-18 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 51 / 3e-08 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 51 / 6e-08 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 40 / 0.0004 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 40 / 0.0005 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027178 pacid=23145419 polypeptide=Lus10027178 locus=Lus10027178.g ID=Lus10027178.BGIv1.0 annot-version=v1.0 ATGAAGCAGAAAAACAAACCCCGAAAGCGAAGCTGCTTCGTGCTCTGCGCAATTTCAACGGCTATTCTCTTCGTTCTCATCCTCCTCATCGGAATAACTC TCGGATTCACGGTCTTTCGACCGAGAAACCCCACCATAACCCTCTACCCAGATGGACTGAAAGACTTCTCGTTAACAGACCTGTTGATCGCCAAAAACAT CACCACCAAATTGGTAATCCAAATCACCAATCAAAACCGCATCCGTTTCAAATTCCGGAACGCTACCAGCGTGGCGCTCTACGGCCACGACGACCATCCG GTAGTGGTCGGAGAGGTCCATATAACAGAGGATGAGATCCCAATCAGGTCGACGGTGAACCTGACGGCGCCGGCTGTACTGATGGCGTCGAAGATGAGGA CGGTGGCGGTGGGGGACATAGCGAGGGGGCAAGCGAACTTGACTTCGAAGGCGACGCTGCACGGGACAGCGTCGTTGATGGGGTTGAAGCTGAAGGCGTC GGTCTACGTCGAATGTTACCTTACGGTGGTGATGCTTAACCGGACGTTGGGCGGGTCGGGTTGGTGCTGGACTGAGATGAAGATGAACTGA
AA sequence Show only first row Show all	>Lus10027178 pacid=23145419 polypeptide=Lus10027178 locus=Lus10027178.g ID=Lus10027178.BGIv1.0 annot-version=v1.0 MKQKNKPRKRSCFVLCAISTAILFVLILLIGITLGFTVFRPRNPTITLYPDGLKDFSLTDLLIAKNITTKLVIQITNQNRIRFKFRNATSVALYGHDDHP VVVGEVHITEDEIPIRSTVNLTAPAVLMASKMRTVAVGDIARGQANLTSKATLHGTASLMGLKLKASVYVECYLTVVMLNRTLGGSGWCWTEMKMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	0	1
AT5G65030			unknown protein		Lus10014340 [exp]	1.0	0.9035
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	1.4	0.8057
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	2.8	0.7980
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	4.5	0.7938
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	6.6	0.6991
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	6.9	0.7771
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	7.3	0.7470
AT1G27990			unknown protein		Lus10037043 [exp]	8.4	0.7327
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	8.4	0.7254
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	11.0	0.8031

Compare expression of checked genes

Lus10027178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.