Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039662 [exp] 295 / 1e-102 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 194 / 6e-63 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 136 / 3e-40 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 128 / 3e-37 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 117 / 8e-33 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 116 / 1e-32 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 98 / 5e-25 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039663 [exp] 87 / 3e-22 ND / Lus10039665 [exp] 89 / 7e-22 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 74 / 2e-16 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 44 / 2e-05 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10027179 pacid=23145564 polypeptide=Lus10027179 locus=Lus10027179.g ID=Lus10027179.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAAAACCGAGCACCACCACCCAAAAAACAGAGGAGCCGCCGCAGCTTCCTCCTCCTCTGCTCAATCTCAACAGCAACCCTCCTCGCCGCCG TAATCCTCACCGGAGTAATCCTCGGACTCACAGTCTACAAACCCAGAAACCCAATAGTAGTCCTCTTCCCCGTCGGCCTAAAAAACCTATCTTTAACCGA GCTAATCATCGCCAGAAACGTCACCACCAAGATGGTGATCCAGATCACCAACCGAAACAGAGCCCGCTTCAAGTTTCGAAACGCGACCAGCATCGTCTTT TACAATAATCTGGTGGTGGGTGAGGTCCCGATTGTGGAGACCGAGATTCCGGCGAAGTCAACGGTGAACCTGACGACGGAAGCGGTGCTGATGGCGTCCG AGATGAAGACGGCGGCGGTGGGAGATATTGCGGCGGGGAAGGTGAATTTGACGTCGAAGGTGACTCTGTACGGGAAATCGAAGTTGTTGGGGTTGAAGTT GAAGACGTCGGTTTACACGGAGTGTTATCTGACGGTGGTGGTTAACCGGACGTTTAGTGGGACGAGCTGGTGCTGGAGTAAGCTGAAGATAAACTGA
AA sequence Show only first row Show all	>Lus10027179 pacid=23145564 polypeptide=Lus10027179 locus=Lus10027179.g ID=Lus10027179.BGIv1.0 annot-version=v1.0 MEEKNRAPPPKKQRSRRSFLLLCSISTATLLAAVILTGVILGLTVYKPRNPIVVLFPVGLKNLSLTELIIARNVTTKMVIQITNRNRARFKFRNATSIVF YNNLVVGEVPIVETEIPAKSTVNLTTEAVLMASEMKTAAVGDIAAGKVNLTSKVTLYGKSKLLGLKLKTSVYTECYLTVVVNRTFSGTSWCWSKLKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	0	1
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	1.4	0.9869
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	1.7	0.9828
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	2.0	0.9867
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	4.2	0.9673
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	4.5	0.9695
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	4.5	0.9696
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	4.9	0.9636
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	6.0	0.9629
					Lus10041251 [exp]	7.0	0.9653
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	7.1	0.9488

Compare expression of checked genes

Lus10027179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.