Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 176 / 2e-57 ATBTF3 basic transcription factor 3 (.1) AT1G73230 174 / 1e-56 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039661 [exp] 198 / 3e-66 AT1G17880 253 / 2e-87 basic transcription factor 3 (.1) Lus10031551 [exp] 190 / 7e-63 AT1G17880 255 / 2e-88 basic transcription factor 3 (.1) Lus10015123 [exp] 189 / 1e-62 AT1G17880 253 / 1e-87 basic transcription factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141100 [exp] 186 / 2e-61 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1) Potri.004G078300 [exp] 186 / 3e-61 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.015G029800 [exp] 170 / 4e-55 AT1G17880 232 / 4e-79 basic transcription factor 3 (.1) Potri.012G037900 [exp] 170 / 5e-55 AT1G73230 225 / 1e-76 Nascent polypeptide-associated complex NAC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10027180 pacid=23145476 polypeptide=Lus10027180 locus=Lus10027180.g ID=Lus10027180.BGIv1.0 annot-version=v1.0 ATGAAGATGGCCGGTTCGGTTCGCACCGGCGGGAAGGGAACCGTACGCAGAAAGAAGAAGGCAGTGCACAAATCGACCACCACAGACGACAAGAAGCTTC AGGGGACACTGAAGAGGATTGGAGTAAACACAATCCCCGCCATTGAGGAGGTCAACATCTTCAAGGATGATTTGGTGATTCAGTTTCTGAACCCTAAAGT GCAGGCTTCAATTGCTGCCAATACTTGGGTCATCACTGGTTCTCCTCAAACCAGAAAGTTGCAAGATATTCTTCCAGGAATCATCAACCAGCTTGGACCG GATAACATGGACAACCTGAAGAAGTTGGCTGTGCAGTTCCAAAAGGAGGCACCAGCTGGTGCTGCAACCGAAGAAGAAGATGATGACGATGTACCAGAGC TCGTAGCTGGGGAGACATTTGAAGCAGCAGCTGCGGAAGAGACTCGTGCTTAA
AA sequence Show only first row Show all	>Lus10027180 pacid=23145476 polypeptide=Lus10027180 locus=Lus10027180.g ID=Lus10027180.BGIv1.0 annot-version=v1.0 MKMAGSVRTGGKGTVRRKKKAVHKSTTTDDKKLQGTLKRIGVNTIPAIEEVNIFKDDLVIQFLNPKVQASIAANTWVITGSPQTRKLQDILPGIINQLGP DNMDNLKKLAVQFQKEAPAGAATEEEDDDDVPELVAGETFEAAAAEETRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10027180 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	2.4	0.9599
AT4G24175			unknown protein		Lus10017264 [exp]	6.3	0.9235
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	8.4	0.9422
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	8.7	0.9390
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	12.6	0.9281
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	13.2	0.9270
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	15.9	0.9201
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	20.5	0.9269
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	21.2	0.9260
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	22.0	0.9224

Compare expression of checked genes

Lus10027180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.