Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21740 240 / 4e-78 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) AT5G57930 127 / 8e-34 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 110 / 2e-27 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 104 / 2e-25 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039659 [exp] 493 / 6e-178 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10039122 [exp] 113 / 1e-28 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 111 / 9e-28 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 109 / 6e-27 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041934 [exp] 94 / 2e-23 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 97 / 9e-23 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 95 / 1e-21 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10041933 [exp] 92 / 5e-21 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 88 / 1e-19 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037200 [exp] 199 / 2e-62 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Potri.006G183900 [exp] 119 / 9e-31 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 117 / 7e-30 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 115 / 4e-29 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 107 / 2e-26 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10027182 pacid=23145431 polypeptide=Lus10027182 locus=Lus10027182.g ID=Lus10027182.BGIv1.0 annot-version=v1.0 ATGATGTTGTATTCACGGGTGGCTTCTGCGAGGAAGACACTGTGGGGGAATGCTGTCGTGGGAGAATCCAATGGTTACATTGGATGGTGCAGGTTTTACT CAGCAAGAGAGGTGGACTGGCGTAAGCTGAGGTCTATGATTATAAAGAGAGTTGAGGATCGGGCAGGGGAGTATCCGGTGAAAGCAATGGTTCCTGTAGC AGAAGAGGTGCTTAACGCTAGGATGAGAGTTATTCGTGGCGTATCTGCTTTGGTGAAAGCCGTCCCTGTCGTTGCTTGCAAGTTCTGTCCTGAAGTGTTT GTTGGAGGGGAAGGTCATTTGATCCAAACGTGTAAAGGGTACAAGCGAATTGGGAAGAAACGAGTTCACGAATGGATACCCGGTACCTCGAACGATATAC TCGTCCAAGTAGAGTCATTTCACTTGCCTGACATGTCTCCGAAGATTATTAAACACGACCAAAGGTCAGGTGTAGAGAAGTTGTTGCTGGATTATCCTGC TAAAGTCTGCAAACATTGCTCCGAAGTCCATGTTGGTCCTTCGGGACATAAAGCTCGGCTCTGTGGGGTGTTCAAGTATGAGTCTTGGAGGGGGACGCAT TTTTGGCAGAAGGCTGTTGTTGATGACTTGGTACCTCCGAGAGTTGTTTGGAGCAGACGGCCTCAGGATCCTCCTGCTCTGTCGAATGAAGGACGAAACT TCTATGGACGCGCACCAGCAGTGGTCGATTTGTGTGCTAAAGCTGGTGCCCTTGTCCCAACCAAGTACTATTGCATCATGAAAATTCAGGGCATGTCTCC CGTTTCTCGATCACTGGCAAATGGGGAACAAGATGCTTGCAGTTGA
AA sequence Show only first row Show all	>Lus10027182 pacid=23145431 polypeptide=Lus10027182 locus=Lus10027182.g ID=Lus10027182.BGIv1.0 annot-version=v1.0 MMLYSRVASARKTLWGNAVVGESNGYIGWCRFYSAREVDWRKLRSMIIKRVEDRAGEYPVKAMVPVAEEVLNARMRVIRGVSALVKAVPVVACKFCPEVF VGGEGHLIQTCKGYKRIGKKRVHEWIPGTSNDILVQVESFHLPDMSPKIIKHDQRSGVEKLLLDYPAKVCKHCSEVHVGPSGHKARLCGVFKYESWRGTH FWQKAVVDDLVPPRVVWSRRPQDPPALSNEGRNFYGRAPAVVDLCAKAGALVPTKYYCIMKIQGMSPVSRSLANGEQDACS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10027182 [exp]	0	1
AT2G21290			unknown protein		Lus10018053 [exp]	5.1	0.7487
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	5.7	0.7457
AT4G23330			unknown protein		Lus10032266 [exp]	8.7	0.7326
AT3G18840			Tetratricopeptide repeat (TPR)...		Lus10001445 [exp]	12.4	0.6626
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	18.5	0.7324
AT1G29530			unknown protein		Lus10015254 [exp]	18.7	0.7145
					Lus10025864 [exp]	19.4	0.6562
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	24.8	0.7077
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10012579 [exp]	27.6	0.6681
AT1G01170			Protein of unknown function (D...		Lus10042373 [exp]	27.9	0.6918

Compare expression of checked genes

Lus10027182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.