Plant FIBer expression Database

Lus10027183 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32360 47 / 2e-07 Ubiquitin-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039658
[exp]
140 / 9e-45 AT2G32360 69 / 4e-16 Ubiquitin-like superfamily protein (.1)
Lus10015125
[exp]
94 / 2e-26 AT2G32360 61 / 1e-12 Ubiquitin-like superfamily protein (.1)
Lus10031549
[exp]
93 / 1e-24 AT3G05870 158 / 6e-50 anaphase-promoting complex/cyclosome 11 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G122500
[exp]
92 / 1e-25 AT2G32360 66 / 2e-14 Ubiquitin-like superfamily protein (.1)
Potri.017G037500
[exp]
91 / 2e-25 AT2G32360 67 / 2e-15 Ubiquitin-like superfamily protein (.1)
Potri.017G037400
[exp]
0 / 1 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
Representative CDS sequence
>Lus10027183 pacid=23145545 polypeptide=Lus10027183 locus=Lus10027183.g ID=Lus10027183.BGIv1.0 annot-version=v1.0
ATGATGGTGGTGGTGGAGATATTGACAGGCAGCCTCTTCCATGTCAATGTAGGAGAAGATGCCACAGTCGGTGATCTTAAACGAGAAATCGAATCACAGC
AGAAGCTACCTGTGGATCGCATGATACTCCTGCTCGGTGATGATCGTTTAGACGACGATGATAATTCGCTTCTTTCTGAGTGTAGAGTTCAAGATGGCTC
CCATGTCTATCTCTTCTTCAATCCTTTAGATGATGGCTCTTCTCATAGCTTCATTTTCGCTGGGCCGGAGGCCTCTTCTTGA
AA sequence
>Lus10027183 pacid=23145545 polypeptide=Lus10027183 locus=Lus10027183.g ID=Lus10027183.BGIv1.0 annot-version=v1.0
MMVVVEILTGSLFHVNVGEDATVGDLKREIESQQKLPVDRMILLLGDDRLDDDDNSLLSECRVQDGSHVYLFFNPLDDGSSHSFIFAGPEASS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32360 Ubiquitin-like superfamily pro... Lus10027183
[exp]
0 1
AT5G44950 F-box/RNI-like/FBD-like domain... Lus10018863
[exp]
4.0 0.7281
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Lus10026455
[exp]
8.6 0.6650
AT1G53210 sodium/calcium exchanger famil... Lus10017657
[exp]
10.5 0.6579
AT2G20990 SYT1, NTMC2TYPE... SYNAPTOTAGMIN 1, ARABIDOPSIS T... Lus10027842
[exp]
16.0 0.6202
AT1G50750 Plant mobile domain protein fa... Lus10036654
[exp]
19.6 0.5315
Lus10011766
[exp]
20.7 0.5659
Lus10015034
[exp]
26.3 0.5692
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10029564
[exp]
31.1 0.5805
AT3G07130 ATPAP15, PAP15 purple acid phosphatase 15 (.1... Lus10007117
[exp]
31.9 0.5803
AT3G28630 Protein of unknown function (D... Lus10001124
[exp]
34.6 0.6089

Lus10027183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.