Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 580 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 557 / 0 Galactosyltransferase family protein (.1) AT4G26940 539 / 0 Galactosyltransferase family protein (.1.2) AT1G11730 461 / 9e-162 Galactosyltransferase family protein (.1) AT1G32930 456 / 1e-159 Galactosyltransferase family protein (.1) AT1G77810 434 / 3e-151 Galactosyltransferase family protein (.1.2) AT1G33430 421 / 7e-146 Galactosyltransferase family protein (.1.2) AT1G22015 406 / 5e-140 DD46 Galactosyltransferase family protein (.1) AT5G53340 226 / 1e-70 Galactosyltransferase family protein (.1.2) AT4G32120 194 / 3e-58 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039657 [exp] 755 / 0 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 608 / 0 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 596 / 0 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 550 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 546 / 0 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 459 / 9e-161 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 457 / 4e-160 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 457 / 7e-160 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 456 / 2e-159 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228900 [exp] 625 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 619 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 476 / 1e-167 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 469 / 5e-165 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 468 / 2e-164 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 463 / 1e-162 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 446 / 1e-155 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 442 / 4e-154 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 424 / 1e-146 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 229 / 8e-72 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027185 pacid=23145365 polypeptide=Lus10027185 locus=Lus10027185.g ID=Lus10027185.BGIv1.0 annot-version=v1.0 ATGGACAGTTTTCCTCTGCTTAGTCTGTTTCTGCTCAGGATTGCTCTTCACCAACAGGTTTATCATCATCATCAGAAGAAGATGTCGTTCAAGTCAAGAA CAGAGCAGCAATTCCTCCCCAAAAATGGAAACTTTTCATCTGCTGTGCCTCAGAAATGGACAGTTTTCCTCTGCTTAGTCTGTTTCTGTTCAGGATTACT CTTCACCAACAGGATGTGGTCTGTTCATGAGCCTAAAAGTGGTCTAACAAGGACTACTGCAGTTGAAGCTGAGAAGCTGAAGTTGATCTCTGAGGGTTGT GGCTCGATCATAACCAAGGATGTGAGGCCGGACTCGAAGGACATCAGTAGAACGATAGATAAGACGATTTCTAGCTTAGAGATGGAGCTTGCTGCTGCAA AGGCAACGCAGGAATCGTTGCTAACCGGCTCTCCTCGTTCGGATGATGAATCGAAGAAAGGTTCGCCATTGAAGAAGAAGAGGAAGTACTTGATGGTGGT GGGAATTAATACTGCATTTAGCAGCAGGAAGAGGAGAGATTCGGTTCGTGACACGTGGATGCCTCAAGGTGAAAAGAGGAAGAAACTGGAAGAAGAGAAG GGTATCATTATTCGATTCGTTATTGGTCACAGTGCTACATCAGGTGGGATTTTGGACAGAGCAATTGAGGCAGAAGATAGAAGGCATGGAGATTTCTTGA GGCTGGATCATGTCGAAGGATACCTCGAATTATCAGCAAAGACAAAGATCTACTTCGCTACAGCTATTTCCATGTGGGACGCGGATTTCTATGTCAAAGT TGACGACGATGTTCATGTTAATCTAGCTACACTTGGAGAAACAATGGTTAGGCACAGAAAGAAACCAAGAGTGTACATAGGATGCATGAAATCTGGTCCT GTTCTTAACCAAAAGGGAGTGAGATATCATGAGCCAGAGTACTGGAAATTCGGCGAGGCAGGAAACAAGTACTTCCGCCATGCCACCGGGCAGCTCTACG CAATCTCTCACGATTTAGCTTCATACATTTCGTTAAACCAACATGTCCTCCACAAGTTTGCTAACGAGGATGTCTCGTTGGGATCGTGGTTCATCGGCCT CGATTTGGACCATATTGACGATCGTAGACTATGCTGTGGCACTTCAGATTGTGAGTGGAAGGCTCAAGCTGGCAACGCCTGTGTTGCTTCGTTCGACTGG AGCTGCAGCGGGATATGTAGATCGTCAGATCGGATCAAGGATGTCCATCGACGGTGTGGGGAAAACCCGAATGCTGTATGGAATGCAACATTCTTCTAA
AA sequence Show only first row Show all	>Lus10027185 pacid=23145365 polypeptide=Lus10027185 locus=Lus10027185.g ID=Lus10027185.BGIv1.0 annot-version=v1.0 MDSFPLLSLFLLRIALHQQVYHHHQKKMSFKSRTEQQFLPKNGNFSSAVPQKWTVFLCLVCFCSGLLFTNRMWSVHEPKSGLTRTTAVEAEKLKLISEGC GSIITKDVRPDSKDISRTIDKTISSLEMELAAAKATQESLLTGSPRSDDESKKGSPLKKKRKYLMVVGINTAFSSRKRRDSVRDTWMPQGEKRKKLEEEK GIIIRFVIGHSATSGGILDRAIEAEDRRHGDFLRLDHVEGYLELSAKTKIYFATAISMWDADFYVKVDDDVHVNLATLGETMVRHRKKPRVYIGCMKSGP VLNQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISHDLASYISLNQHVLHKFANEDVSLGSWFIGLDLDHIDDRRLCCGTSDCEWKAQAGNACVASFDW SCSGICRSSDRIKDVHRRCGENPNAVWNATFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10033024 [exp]	4.7	0.8011
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	5.5	0.8175
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	8.0	0.8482
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	10.4	0.8450
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024424 [exp]	13.4	0.8024
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	16.2	0.8192
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	20.5	0.8016
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	23.2	0.8188
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	29.8	0.7944
AT3G44716			unknown protein		Lus10009406 [exp]	30.2	0.7490

Compare expression of checked genes

Lus10027185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.