Plant FIBer expression Database

Lus10027190 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05140 159 / 8e-48 Peptidase M50 family protein (.1)
AT2G32480 146 / 7e-43 ARASP ARABIDOPSIS SERIN PROTEASE (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035276
[exp]
182 / 3e-60 AT1G05140 232 / 1e-75 Peptidase M50 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G154000
[exp]
165 / 5e-50 AT2G32480 548 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
Potri.002G228600
[exp]
159 / 1e-47 AT2G32480 564 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
Representative CDS sequence
>Lus10027190 pacid=23145440 polypeptide=Lus10027190 locus=Lus10027190.g ID=Lus10027190.BGIv1.0 annot-version=v1.0
ATGGAAGCGTTCAGCTTTGCGGGGAGGGAATTTGCAGGGCTGAGTTATAATGTGGTTGATAGTTTGAGGCAGACGGTGATGAACTTCTCACAGACGGCGA
GTAAAGTTGCCGGGCCGGTGGCGATCATCGCGGTGGGGGCTGAGGTAGCGAGGTCGAACGTGGACGGACTGTATCAGTTCGCGGCGTTGCTGAATTTGAA
CTTGGCTGTGATAAATTTGCTGCCTTTGCCTGCTCTGGATGGAGGGTCTTTGGCGTTGATACTGATTGAGGCGGCTAGAGGTGGGAGGAAGCTGCCGATG
GAGCTCGAGCAGCGGATCATGTCGTCGGGGATTACGGTTGTGTTGCTTCTGGGATTGTTTCTTATTGTTAGGGATACTCTGAACCTTGATTTCATCAGGG
AGATGTTGTGA
AA sequence
>Lus10027190 pacid=23145440 polypeptide=Lus10027190 locus=Lus10027190.g ID=Lus10027190.BGIv1.0 annot-version=v1.0
MEAFSFAGREFAGLSYNVVDSLRQTVMNFSQTASKVAGPVAIIAVGAEVARSNVDGLYQFAALLNLNLAVINLLPLPALDGGSLALILIEAARGGRKLPM
ELEQRIMSSGITVVLLLGLFLIVRDTLNLDFIREML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05140 Peptidase M50 family protein (... Lus10027190
[exp]
0 1
AT4G32260 PDE334 PIGMENT DEFECTIVE 334, ATPase,... Lus10041039
[exp]
3.0 0.9528
AT5G57345 unknown protein Lus10001632
[exp]
3.5 0.9464
AT3G58070 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, ... Lus10016238
[exp]
4.0 0.9351
AT5G17170 ENH1 enhancer of sos3-1, rubredoxin... Lus10003157
[exp]
4.2 0.9446
AT5G57345 unknown protein Lus10001438
[exp]
4.9 0.9389
AT4G24930 thylakoid lumenal 17.9 kDa pro... Lus10028969
[exp]
6.0 0.9372
AT1G75460 ATP-dependent protease La (LON... Lus10024294
[exp]
6.6 0.9141
AT5G52420 unknown protein Lus10027495
[exp]
8.9 0.9313
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Lus10016033
[exp]
9.5 0.9383
AT5G11840 Protein of unknown function (D... Lus10027492
[exp]
9.5 0.9201

Lus10027190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.