Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 126 / 8e-36 Protein of unknown function (DUF1442) (.1) AT3G60780 59 / 2e-10 Protein of unknown function (DUF1442) (.1) AT2G45360 55 / 6e-09 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031701 [exp] 207 / 3e-67 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 194 / 3e-62 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 48 / 2e-06 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 47 / 3e-06 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 45 / 2e-05 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128900 [exp] 184 / 2e-58 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 177 / 5e-56 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 137 / 5e-40 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 84 / 2e-19 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 66 / 2e-13 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 54 / 1e-08 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 50 / 2e-07 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 49 / 8e-07 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 43 / 6e-05 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10027191 pacid=23145542 polypeptide=Lus10027191 locus=Lus10027191.g ID=Lus10027191.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTTGGTCAGCAAAGAACGCCACAAACGCTTACCTAAGAACACTAAGAATGGTGGGGCACAGCAACAACAAGGCAGAGGAGCCAGAAGCAG CAGAGTTCATCTCCGCTCTAGCTGCCGGCAACAACTCACAGCTCATGGTCATCGCTGCCGCCTCTTCCTCCGCCACTTCATCGACCATCCTAGCCCTTGT GGCGGCGGCACACCAAACCGGCGGACGAGTCGTCTGCATCCACAGCAGCGAGGAGGAGACCGAACTTTCCAAAAGGGCGCTCGGACCCTTTTGGAAAGCC CGGAGTGAAGTGTTGGACTTCGTGACGGGGAGGGTCCATGAGATTTTGGGGTCGGCGCAGTACGAGGGAGTGGATTTTGTGGCTATTGATTGTAATTTGG AAGGCCATGAGAAAGTGTTGGGAGCGGCGAGAGAGCGAAATGGTGTCGTTGTAGTGGGTTACAATGCAGATTTCAATGGGGTTGGGTCATGGTGGCGTTC GAGCGGGTGGCGGACCCAGATGTTGCCGATTGGTGATCGGGGCGGGTTGCTTGTGACCCGAGTTTTGCCGCCGACGGCGAGGAAAGTGGCAGCTGGCGGT GGGAGGTGTGGGAGTGGGAGTGGGAGTCGGTGGGTTGTGAAGGTGGATCAATGTACCGGTGAAGAGCACGTGTTTAGGGTGAGATGA
AA sequence Show only first row Show all	>Lus10027191 pacid=23145542 polypeptide=Lus10027191 locus=Lus10027191.g ID=Lus10027191.BGIv1.0 annot-version=v1.0 MATCWSAKNATNAYLRTLRMVGHSNNKAEEPEAAEFISALAAGNNSQLMVIAAASSSATSSTILALVAAAHQTGGRVVCIHSSEEETELSKRALGPFWKA RSEVLDFVTGRVHEILGSAQYEGVDFVAIDCNLEGHEKVLGAARERNGVVVVGYNADFNGVGSWWRSSGWRTQMLPIGDRGGLLVTRVLPPTARKVAAGG GRCGSGSGSRWVVKVDQCTGEEHVFRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	0	1
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	1.0	0.9884
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	2.0	0.9876
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	3.0	0.9819
					Lus10032253 [exp]	3.5	0.9815
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	4.5	0.9728
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	5.7	0.9664
AT1G06930			unknown protein		Lus10009929 [exp]	5.9	0.9809
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	6.3	0.9759
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	6.5	0.9790
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	6.6	0.9750

Compare expression of checked genes

Lus10027191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.