Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62290 273 / 2e-93 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038909 [exp] 397 / 3e-142 AT5G62290 271 / 9e-93 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129900 [exp] 303 / 2e-105 AT5G62290 278 / 2e-95 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2) Potri.012G128500 [exp] 299 / 2e-103 AT5G62290 256 / 9e-87 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF03517 [flax] [poplar] Voldacs Regulator of volume decrease after cellular swelling
Representative CDS sequence Show only first row Show all	>Lus10027193 pacid=23145379 polypeptide=Lus10027193 locus=Lus10027193.g ID=Lus10027193.BGIv1.0 annot-version=v1.0 ATGGTTCCAGGTCTCAGACAATTCACCGAACGAACGCCGGCATCCGCCGCCGGAGAACCGGTGCTGGACACTGCAAACGGCGAGGAGCTGGTGCATACTG AGCCCGGAGTCGCCATTGCCATCGGCAATCGATCTCTAGAGTCTCCCGGAACTCTCTACATCTCCTCCAAGAAGGTTGTTTGGTTGAGCGACGTCGACAG AGAAAAAGGATATGCAGTTGATTTCTTGTCTCTTTCGCTTCATGCTGTGTCTAGGGATCCCGAAGCATATCCTTCCCCTTGCATTTACGCTCAGATCGAT ACAGGAGACGATGAAGATGACTCAGATGGCTCGGATTCGGATAACCATGATCCAGTAGACTTGTCCAGGGTTACAGAGATGAGGCTTATTCCTTCAGATC CTAGCCAATTGGATCATCTTTTCCAGATATTCTGCGAATGTGCTGAGATGAATCCCGAACCAATCGATGAGGATGTACAAATGGGAGGCAACAACTGGAT CTTCAGCGCTGACCAGATGGTCAATGAAGGAGAAGATGAGGAAGGCCCGGATTGGAGTTTTTTCCAGACTCCGACGAGCTCCATTGGTCATTCTAACGGC GATGCTGACCTGGCCCGGAATGTTCTCGAGCTGCAAATCAACGATCAACGTTTCGAGGATGCGGAAGAGATGGAACGCGAGAAAGAGAATTGA
AA sequence Show only first row Show all	>Lus10027193 pacid=23145379 polypeptide=Lus10027193 locus=Lus10027193.g ID=Lus10027193.BGIv1.0 annot-version=v1.0 MVPGLRQFTERTPASAAGEPVLDTANGEELVHTEPGVAIAIGNRSLESPGTLYISSKKVVWLSDVDREKGYAVDFLSLSLHAVSRDPEAYPSPCIYAQID TGDDEDDSDGSDSDNHDPVDLSRVTEMRLIPSDPSQLDHLFQIFCECAEMNPEPIDEDVQMGGNNWIFSADQMVNEGEDEEGPDWSFFQTPTSSIGHSNG DADLARNVLELQINDQRFEDAEEMEREKEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	0	1
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	4.0	0.9167
AT3G06700			Ribosomal L29e protein family ...		Lus10037740 [exp]	4.1	0.9436
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	5.7	0.9299
AT5G19300			unknown protein		Lus10034063 [exp]	7.1	0.9214
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	7.7	0.9274
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	9.6	0.9339
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	10.5	0.9358
AT4G13720			Inosine triphosphate pyrophosp...		Lus10023678 [exp]	13.3	0.8700
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	14.9	0.8750
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	15.7	0.9285

Compare expression of checked genes

Lus10027193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.