Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 418 / 3e-147 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 412 / 9e-145 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 402 / 5e-141 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 373 / 5e-129 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 372 / 7e-129 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 355 / 3e-122 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G14790 66 / 4e-12 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 63 / 3e-11 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 58 / 1e-09 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G47290 46 / 1e-05 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038911 [exp] 483 / 2e-175 AT1G02000 440 / 8e-156 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10009288 [exp] 398 / 3e-139 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 397 / 1e-138 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 396 / 2e-138 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 395 / 9e-138 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10031127 [exp] 390 / 1e-136 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 381 / 1e-132 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10015496 [exp] 377 / 4e-131 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10016640 [exp] 377 / 2e-130 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128200 [exp] 405 / 1e-142 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 399 / 1e-139 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 398 / 2e-139 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 384 / 1e-133 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 382 / 2e-132 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 375 / 2e-130 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.018G100400 [exp] 353 / 2e-121 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 348 / 9e-120 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 174 / 2e-55 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.006G272700 [exp] 63 / 3e-11 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10027195 pacid=23145394 polypeptide=Lus10027195 locus=Lus10027195.g ID=Lus10027195.BGIv1.0 annot-version=v1.0 ATGAAAAACCCAGCCTCCTACGTCCACAGCAACATCGCCGGACTTGTTACCCTCTTCGAAGCTTGCAAATCCGCCGATCCTCAACCGGCGATCGTCTGGG CATCTTCCAGCTCAGTCTACGGCCTCAACACTAAAGTCCCCTTCTCCGAGAAGGACCGGACTGATTCGCCGTCGAGCCTCTACGCCGCAACCAAAAAAGC CGGCGAGGAGATGGCCCACACTTACAATCACATCTATGGGCTTTCCATTACAGGCTTGAGATTTTTCACCGTATATGGGCCGTGGGGCAGGCCTGATATG GCTTACTTCTTCTTCACCCGCGATATCTTAAAAGGAAAGCCCATTAGTATCTACGAAGGTCCCAATCATTTCACGGTGGCTAGGGATTTCACATACATCG ACGATATCGTTAAGGGATTGCTCGGAGCTCTCGACACGGCGGAGAAGAGCACCGGCAGCGGCGGAGTGAAGAGAGGGAAAGCGCAATTGAGAGTTTATAA CTTGGGGAATACTTCGCCGGTGCCCGTGGCGAAGCTTGTGAGTATATTGGAGAAGCTGTTGAAGGTTAAGGCGAAGAAGAAGGTGATGGCGATGCCGGCG AACGGAGATGTGTTGTTTACGCATGCGAATATCAGTCAGGCGCAGAGGGATTTTGGGTACAAGCCGAGTACGGATTTGCAAACTGGGTTGAAGAAGTTTG TGAAGTGGTACTTGGATTACTATCATCCTGGTGGAGTTGCCAAGAGTTCGTTGTGA
AA sequence Show only first row Show all	>Lus10027195 pacid=23145394 polypeptide=Lus10027195 locus=Lus10027195.g ID=Lus10027195.BGIv1.0 annot-version=v1.0 MKNPASYVHSNIAGLVTLFEACKSADPQPAIVWASSSSVYGLNTKVPFSEKDRTDSPSSLYAATKKAGEEMAHTYNHIYGLSITGLRFFTVYGPWGRPDM AYFFFTRDILKGKPISIYEGPNHFTVARDFTYIDDIVKGLLGALDTAEKSTGSGGVKRGKAQLRVYNLGNTSPVPVAKLVSILEKLLKVKAKKKVMAMPA NGDVLFTHANISQAQRDFGYKPSTDLQTGLKKFVKWYLDYYHPGGVAKSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	1.0	0.9181
AT4G35320			unknown protein		Lus10022985 [exp]	1.4	0.9129
					Lus10024338 [exp]	1.7	0.8764
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	2.2	0.8666
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	2.8	0.8753
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	3.7	0.8384
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	8.0	0.8327
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	8.1	0.7999
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	8.4	0.7548
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	8.5	0.8072

Compare expression of checked genes

Lus10027195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.