Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62310 1378 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 985 / 0 Protein kinase superfamily protein (.1) AT1G48490 927 / 0 Protein kinase superfamily protein (.1.2.3) AT1G45160 572 / 0 Protein kinase superfamily protein (.1.2) AT1G30640 281 / 1e-82 Protein kinase family protein (.1) AT4G14350 275 / 2e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 272 / 3e-79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G20470 268 / 1e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G33080 263 / 9e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT1G03920 259 / 1e-74 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038912 [exp] 2121 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 963 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10031906 [exp] 756 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10005470 [exp] 605 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021176 [exp] 271 / 3e-79 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 270 / 4e-79 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 263 / 5e-76 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 262 / 9e-76 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10042650 [exp] 254 / 3e-73 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127800 [exp] 1471 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 1455 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G044700 [exp] 815 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 813 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 619 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 274 / 4e-80 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 267 / 2e-77 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 265 / 5e-77 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 260 / 3e-75 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 257 / 4e-74 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027196 pacid=23145427 polypeptide=Lus10027196 locus=Lus10027196.g ID=Lus10027196.BGIv1.0 annot-version=v1.0 ATGAAGGACCTGATCGCGTTCGTCGTCAGCAACAGCCGATCATGTCAAGCTACCCGCCGTCAACGTCCGATAACGCCGAACCGTCCGCCGCGACGGCGTT GTCGCTCTCCTTGCCGCCGCCCTCGTTCACACCCGCCGTCAACGTCCGATAACGCCGAACCGTCCGCTGCGACGGCGTCGTCGTCATCCTCGACGCCGAC TTCGTACAAACTCAGGAAGATCCCTCACATTCCTTTGCGCCGGATGCACAGATCAGACGCTTCCGAAATGACGCTAGACGATTTCACCGATTTCTCCCGC AACAACGGAGAAGACGGGGAGGTGGAAGAGGACGACGAAGTAGGGGAAATGGAAGAGGAGGAGGACGACGACGATCCGGGAGTGGAATTGGGAGATTCGG ATGGGAAAACGCCGATTATTCTACCGTCCTCGCTCGGATTGAACCATATCAGGACGCGATCGGCTCCGTCTCCTTCTCCGCTTAGGTTTTCGTCGTCCGC CGGGATGCCGTTGAAGATTCCCAATGCTAAGGAGTCGCGTATTGATAAGGAGGAGAAAGTACGTGCGGAAGCGAGGGCCAAGGCGAAGATGAACAATCAG ATACCGCCGACGGATCCTGGAAGGAAGATTTCGTGGAGTCAATCGAAATCCTTACGGCATCCATCGCCGCTTAATATGGCGTTAGAGAATCATCATGCGG CGTTTGCCAAGGAAATGCATTCGCCGCGTTTCCAGGCCATTCTACGGGTTACCAGTGGCCGGAAGAAGAAAGCTCCCGATGTCAAGAGCTTCTCCCATGA GCTCAATTCCAAAGGTGTTCGGCCTTTCCCAATGTGGAAGTCTAGAGCAGTTGGACACATGGAAGAGATAATGGTGGCAATCAGGGCGAAATTCGACAAG TTGAAGGATGAAGTAGACTGTGATTTAGGTATATTTGCTGGGGACTTGGTCAGCATACTGGAAAAGATATCCGAGTCTAATCCTGAATGGAGAGAGAGTT TGGAGGACTTGTTGCTTATTGCTAGAAGATGTGCAAAGATGTCGTCTAGTGAATTTTGGGTGAAATGCGAGGGAATTGTTCAGAGTTTAGATGACAGGCG CCAAGAGCTGCCAATGGGGATCCTGAAGCAAGCACATACGCGGCTTTTGTTCATCCTCACTCGATGCTCTAGGCTTGTGCAGTTTCAAAAAGAGAGTTGT TACGAGGAAGAAAACATTCTGGGTCTTCATCAACTGAGTGATCTTGGAGTTTATCCGGAACAAATGTTGGAGCTTGCTCATCAGGATTACAGTGGCCCAA TCATGGCGGAAAAGTTGTTAGCTGAGAGCCAGAAGAAGAAGTTTCATGACGAGCAAGTTAGTGCGGTTGTGAAACTTGAACCGGTAGAGCCAGAGGTTAG TTCTGCCAAAAGTGCCGATTCAAGTTCAAGCAGCTATAAGATGTCATCTTGGAAAAAGCTTCCAAGTGCCCTTGAGAGACAGAGGAAAGCACTTGATGCA GTTGATACACCTCTGAAGGCAAAATCAGAGCCATCAGAAATCATATGCGAGACGGGTGATGAAAACTCTGAAACTGTCGAAACTCCTGCACCCCCTCCGT CCACAGGGTTGAGAAAAACTTCTTGGGGCTACTGGGGAGAGCATCATAACCTTTCCTATGATAATTCAATGATATGTCGGATATGTGAGGTCGAGATACC AATTGTTCACGTGGAAGAGCATTCTCTAATCTGCTCCATTGCTGACAGATGTGATCTAAAGGGATTAACTATTAACGAACGACTTGAAAGGGTGGCCGAA ACTCTTGATAAGGTTTTGGAATCATGGACACCGAAAAGCATCGATACCCCAAGAGGAACTTCCCGTGAACTGGATGAGGGAGATCGGTCATTTCATCATT GTGCAGAAGACATGCTGGAAGGTGTGGTTGATGCAGAGACTGCATTCGTTGTTGAAGATCTTAATGTTCTACCTGCAATTTCAACGGAGTCACGTTCAAG TCTGGCACCTGATGTAGACTTGAAAGCCTCATCATTTGGAAGCTTGACGCCACGGTCACCATTGTTAACACCACGAACCAGCCAGATTGCCTTGCTAATA AGTGGAAGGAGAACAATTTCAGAACTGGAGAATAATCAGCAGATAACCAAGTTACTTGAAATTGCACGTTCTGTTTCAAATCTAAATGGCGTCGACTATG GTTCACTGGAGTCCATGCTTGATCGTCTGGATGACTTGAAGTATGCCATACAGGACAGAAAGGTGGACGCCCTCATTGTAGAGACTTTCGGACGACGTAT AGAGAAATTGTTACAGGAGAAATATGTGCAGCTGTGTGCACAAATAGACGATGATAAACTAGACCATTCAAATCATATGGCTGACGATGAGAGTTCTGTG GAAGAAGATACAATCCGCAGCTTGCGTGCAAGTCCTATGAATACATGTTCTAAGGACCGAACGTCCATAGAAGATTTCGAAATCATAAAACCAATAAGCA GGGGAGCATTTGGACGGGTTTTCCTCGCCAGAAAAAGAGCAACCGGTGACTTGTTTGCTATAAAGATTTTAAAAAAGGCTGATATGATCCGCAAAAATGC TGTCGAAAGCATATTGGCAGAACGGAACATCCTGATTTCAGTTCGCAATCCTTTTGTGGTCCGATTTTTCTACTCCTTCACATGCAGGGAAAATCTCTAT CTAGTTATGGAGTATCTAAACGGTGGTGATCTGTACTCTTTGTTAAGAAACCTTGGCTGCTTAGACGAGGACATGGCTCGTGTATATATCGCAGAACTCG TGCTTGCTTTGGAGTATCTGCACACTTTGAATGTGATCCATAGAGACCTGAAGCCGGACAACTTGTTGATTTCTCAGGATGGTCATATTAAGTTGACAGA TTTCGGGCTATCCAAGGTCGGTCTCATAGACAGCACAGATGACTTGTCTGGTCCGCTAAGAAGTCCTGCGTTTCTCAACAATAATGCACGAAGTGAGGAG ACCGAATTGATGAGAGAAGAGCGACGAAAACATTCGGTCGTTGGTACTCCAGATTATTTGGCTCCTGAGATTCTTCTTGGCATGGGACACGGTACAACTG CAGATTGGTGGTCCGTGGGGGTTATTCTTTTTGAGCTGCTTGTTGGTATCCCTCCATTCAATGCGTCATCTCCTCAGCTAATATTTGACAATATAATGAA TAGAGATATTCCTTGGCCAAGGGTACCTGATGAGTTGAGCTACGAAGCATATGACTTGATTGACAATCTGCTTACTGAAAACCCAATTCAAAGGCTAGGT GCAACAGGAGCCAAAGAGGTGAAGCATCACGCTTTCTTTAGGGACATCAACTGGGACACGCTAGCAAGGCAAAAGGCTACATTCATACCAGCAGGAGAAG CACACGACACGAGCTACTTCATGAGCCGGTACATATGGAACCCTGAAGACGACAATGTCCGCGGAGCCAGTGATTTTGACGACCTCACTGACTCCACCAC TAGTTCAGTCGGAAACACACCCGAAGAGGAGGGAGATGAATGTGGTAGCTTAACTGACTTCGGAGGACCAACACTTGCAGTGAAGTACTCATTCAGTAAC TTCTCCTTCAAGAACTTGACTCAGTTGGCTTCGATCAACTACGACATGGTCATCAAGAACAGCAAAGAAGCAGCCGACAAGCAATCTGTTCCATAG
AA sequence Show only first row Show all	>Lus10027196 pacid=23145427 polypeptide=Lus10027196 locus=Lus10027196.g ID=Lus10027196.BGIv1.0 annot-version=v1.0 MKDLIAFVVSNSRSCQATRRQRPITPNRPPRRRCRSPCRRPRSHPPSTSDNAEPSAATASSSSSTPTSYKLRKIPHIPLRRMHRSDASEMTLDDFTDFSR NNGEDGEVEEDDEVGEMEEEEDDDDPGVELGDSDGKTPIILPSSLGLNHIRTRSAPSPSPLRFSSSAGMPLKIPNAKESRIDKEEKVRAEARAKAKMNNQ IPPTDPGRKISWSQSKSLRHPSPLNMALENHHAAFAKEMHSPRFQAILRVTSGRKKKAPDVKSFSHELNSKGVRPFPMWKSRAVGHMEEIMVAIRAKFDK LKDEVDCDLGIFAGDLVSILEKISESNPEWRESLEDLLLIARRCAKMSSSEFWVKCEGIVQSLDDRRQELPMGILKQAHTRLLFILTRCSRLVQFQKESC YEEENILGLHQLSDLGVYPEQMLELAHQDYSGPIMAEKLLAESQKKKFHDEQVSAVVKLEPVEPEVSSAKSADSSSSSYKMSSWKKLPSALERQRKALDA VDTPLKAKSEPSEIICETGDENSETVETPAPPPSTGLRKTSWGYWGEHHNLSYDNSMICRICEVEIPIVHVEEHSLICSIADRCDLKGLTINERLERVAE TLDKVLESWTPKSIDTPRGTSRELDEGDRSFHHCAEDMLEGVVDAETAFVVEDLNVLPAISTESRSSLAPDVDLKASSFGSLTPRSPLLTPRTSQIALLI SGRRTISELENNQQITKLLEIARSVSNLNGVDYGSLESMLDRLDDLKYAIQDRKVDALIVETFGRRIEKLLQEKYVQLCAQIDDDKLDHSNHMADDESSV EEDTIRSLRASPMNTCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKILKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLY LVMEYLNGGDLYSLLRNLGCLDEDMARVYIAELVLALEYLHTLNVIHRDLKPDNLLISQDGHIKLTDFGLSKVGLIDSTDDLSGPLRSPAFLNNNARSEE TELMREERRKHSVVGTPDYLAPEILLGMGHGTTADWWSVGVILFELLVGIPPFNASSPQLIFDNIMNRDIPWPRVPDELSYEAYDLIDNLLTENPIQRLG ATGAKEVKHHAFFRDINWDTLARQKATFIPAGEAHDTSYFMSRYIWNPEDDNVRGASDFDDLTDSTTSSVGNTPEEEGDECGSLTDFGGPTLAVKYSFSN FSFKNLTQLASINYDMVIKNSKEAADKQSVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	0	1
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	1.0	0.9353
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	1.4	0.8968
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	1.7	0.8668
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	5.3	0.8649
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	6.5	0.8091
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	6.6	0.8113
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	6.9	0.8193
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	7.9	0.8017
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	8.1	0.8095
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	10.0	0.8036

Compare expression of checked genes

Lus10027196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.