Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62360 126 / 2e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 120 / 5e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 111 / 2e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 100 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 97 / 5e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 97 / 5e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 96 / 1e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 94 / 7e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 90 / 3e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 87 / 2e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038915 [exp] 270 / 5e-93 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 151 / 3e-46 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031717 [exp] 137 / 2e-40 AT5G62360 179 / 3e-57 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 124 / 1e-35 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 122 / 7e-35 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 120 / 3e-34 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 120 / 9e-34 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 113 / 1e-31 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 112 / 1e-30 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128200 [exp] 158 / 4e-49 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 154 / 3e-47 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 151 / 4e-46 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 122 / 5e-35 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 119 / 7e-34 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 119 / 9e-34 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 113 / 3e-31 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 107 / 3e-29 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.012G127400 [exp] 105 / 2e-28 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 104 / 4e-28 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027199 pacid=23145401 polypeptide=Lus10027199 locus=Lus10027199.g ID=Lus10027199.BGIv1.0 annot-version=v1.0 ATGGCATCAACTTCCTCCTCCTCCGCCGCCGCATTCCTCACCATACTACTAATCTCCTCCACCACCACCGTCATCTCCTCCCCCGCCGCCACAACCAATA CCGAGTTCGTCCGCACATCATGCACAGCCACAACCTACCCAAAGCTCTGCTACGCCTCCCTATCAATCCACGCCGCCAAAATCCAGTCAAGCTCCAAGCT CCTGGCCGCCGCCGCACTAGACGTCACCCTCACCTCCGCGAAATCCTCGTCCTCCGCCATGTCAAAGCTCTCACGTGACCACGGCCTCCTGCCACGTGAG TCAGCCGCCATGAAGGACTGCGTGGAGGAGATGCATGACTCCGTCGACCAGCTCCGCCGCTCCATCGACGAGTTCGAATCAACTACGACGAAGCCCGCCG ATCTCGAGATGATGATCAGCGACGTGCAGACGTGGGTCAGCGCCGCGTTGACCGACGAGGGCACGTGCATGGATGGGTTTTCGACTTCCGGTAAGGCGGC GTCGGCGGTGAAGGAGGTGGTGAGAGGGAAGGTGGAGAAGATTGTTCATCTTACTAGTAATGCTTTGGCTTTGGTTAATTGCTATGCTAATTCTCTTCGT AATTAG
AA sequence Show only first row Show all	>Lus10027199 pacid=23145401 polypeptide=Lus10027199 locus=Lus10027199.g ID=Lus10027199.BGIv1.0 annot-version=v1.0 MASTSSSSAAAFLTILLISSTTTVISSPAATTNTEFVRTSCTATTYPKLCYASLSIHAAKIQSSSKLLAAAALDVTLTSAKSSSSAMSKLSRDHGLLPRE SAAMKDCVEEMHDSVDQLRRSIDEFESTTTKPADLEMMISDVQTWVSAALTDEGTCMDGFSTSGKAASAVKEVVRGKVEKIVHLTSNALALVNCYANSLR N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	0	1
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	1.7	0.8687
AT5G67390			unknown protein		Lus10011080 [exp]	2.4	0.8636
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	7.7	0.7924
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	14.1	0.8027
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	16.2	0.7808
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	18.3	0.7910
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	19.3	0.8055
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	20.5	0.7361
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	21.0	0.7506
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	33.1	0.7643

Compare expression of checked genes

Lus10027199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.