Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51510 126 / 3e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038916 [exp] 175 / 8e-54 AT5G51510 81 / 2e-19 unknown protein Lus10040575 [exp] 57 / 1e-08 AT4G31040 494 / 1e-172 CemA-like proton extrusion protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127100 [exp] 192 / 9e-61 AT5G51510 130 / 7e-39 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07086 [flax] [poplar] Jagunal Jagunal, ER re-organisation during oogenesis
Representative CDS sequence Show only first row Show all	>Lus10027200 pacid=23145461 polypeptide=Lus10027200 locus=Lus10027200.g ID=Lus10027200.BGIv1.0 annot-version=v1.0 ATGGGCCATGTCCGGCCCACTTGTCATGTCCGTCAGACCTCCAAACCCGATTCCCCAACCCGGAAACCAGGAACCAGAGAATCAATTTTTCTCAGCGTTC ACAGTTCTGCTCAGCAGCAAGACGAAGAAGTAGAAAGAAAGATGCAGCAGAGGAATCATGGGCGGCCATCAGGAACCGACGGCTCCGATTTCTCCTATCG CATGGTCGTCGATTCTCGCTACACGAAGGTCACAAAGTTGAAGTCTCGCCTCCATGCCCTGATCTTAATTCAGGCGGTGATTCAGCTGGTAGGACTTCTG TCACTAGCTTTATCAATGTGGAGGGAAAAGGTTCTAGATCCGCTGTCCATTTCGTCTACTGCAACTGGGTTAATCGCTCTGCTGATTGGGGAAGTAGGTC GTAGGCGCAGCAAATCAGGATGGTTGAGAATGTATATGTTCGCGTCCTCCATCGGGTTGATCATCTCGCTATTCGCGAAGTTCAACAACAATTCTGCCTT GGAGGTTATGATGAACCCAAGTGACTGGAAAGCGAAGGAGTTTGAAGTTATCGAGATTTCGCTGCTCTTAATTGGTTTGCTGGTGCAGATGGTTGCAGTT GGGACTGGCATTTCTCTGGTTGGGATGAACATTGAGTGGATAGGTTGGGTTTGTGAGCAAATTCAATTCGCTGATCAACACAGTGGGTCACTGTTTCTAT CACCCACCACGCCTTCGGTTGCTGTCGTTGTAGAGATGGAAAGGAGGATTCTGAGTAGGAATGAGGTTGAATTCACATCACATACCTTCCTCTCTCCTTT CTTTTCTGCCATTTCAATATTTCTAATAGTTGAAACTGAATCAAGATCGATTAATGACAAATCACCAATCCACTCAAATCTCGCAGATTATGAAGCCCTG ACACAAAGCTTCCTCCGCCTATCTCCACCGTTGCAGAAGGAAGCTACTCCTCCTCCCAAAGGCAAAGATCCCTCAGCCTCTCCAGTCACCATGAAGCAGC CTTGGAACCAGGAACCTACTCCCTAA
AA sequence Show only first row Show all	>Lus10027200 pacid=23145461 polypeptide=Lus10027200 locus=Lus10027200.g ID=Lus10027200.BGIv1.0 annot-version=v1.0 MGHVRPTCHVRQTSKPDSPTRKPGTRESIFLSVHSSAQQQDEEVERKMQQRNHGRPSGTDGSDFSYRMVVDSRYTKVTKLKSRLHALILIQAVIQLVGLL SLALSMWREKVLDPLSISSTATGLIALLIGEVGRRRSKSGWLRMYMFASSIGLIISLFAKFNNNSALEVMMNPSDWKAKEFEVIEISLLLIGLLVQMVAV GTGISLVGMNIEWIGWVCEQIQFADQHSGSLFLSPTTPSVAVVVEMERRILSRNEVEFTSHTFLSPFFSAISIFLIVETESRSINDKSPIHSNLADYEAL TQSFLRLSPPLQKEATPPPKGKDPSASPVTMKQPWNQEPTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51510			unknown protein		Lus10027200 [exp]	0	1
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	1.0	0.9285
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	1.4	0.9216
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	3.5	0.9013
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	4.0	0.8894
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	5.3	0.8738
AT5G12240			unknown protein		Lus10026824 [exp]	5.5	0.8839
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	5.6	0.8544
AT3G18510			unknown protein		Lus10032475 [exp]	5.7	0.8706
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	5.8	0.8626
AT5G27830			unknown protein		Lus10020660 [exp]	9.5	0.8759

Compare expression of checked genes

Lus10027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.