Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23210 549 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G70710 548 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G02290 522 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 509 / 1e-177 ATCEL2 cellulase 2 (.1) AT4G39010 504 / 1e-175 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 473 / 3e-163 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G71380 458 / 1e-157 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 451 / 6e-155 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G23560 425 / 7e-145 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 421 / 3e-143 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027205 [exp] 822 / 0 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10029071 [exp] 535 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 506 / 6e-176 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 504 / 2e-175 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10018077 [exp] 503 / 9e-175 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 500 / 7e-174 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10031718 [exp] 491 / 1e-170 AT1G70710 498 / 7e-174 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10031139 [exp] 490 / 6e-170 AT1G70710 489 / 5e-170 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10034199 [exp] 477 / 3e-165 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127900 [exp] 684 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 570 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 541 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 540 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 512 / 1e-178 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.002G202400 [exp] 511 / 5e-178 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 508 / 6e-177 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.009G123900 [exp] 503 / 2e-175 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.019G069300 [exp] 492 / 4e-171 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G083200 [exp] 465 / 3e-160 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10027201 pacid=23145354 polypeptide=Lus10027201 locus=Lus10027201.g ID=Lus10027201.BGIv1.0 annot-version=v1.0 ATGGGTTTGTTAGAAAGATCGGTGGCGGCGGTAATGGTGATAATGATGATGGCGGTGGTGGTGGAGAGTGCTGTGGAGCCGATTAGACATGATTATGGCG ATGCATTGAGCAAGTGTATATTGTTCTTTGAAGGGCAGAGGTCGGGAAAGCTTCCTTCAAATCAGAGGATGATTTGGAGGAAAGATTCGGGTCTTCGTGA TGGTTTCCAAATTGATAAGTCATTAAAAGGCTCATTTCCACGCCCGGCCGACCTCGTCGGCGGCTACTACGATGCCGGCGACAATGTCAAATTCAACTTC CCGATGGCCTTCTCCACAACAATGCTGGCCTGGAGCGTGATCGAGTTTGGCAAGATGATGGGTCCCATCGAGAAGCAGCACGCCCTCGAAGCGATCCGGT GGGCCACCGACTACTTCCTCAAGGCCACAGCCATCCCCGGAGTCGTCTTCGCCCAGGTCGGCGATCCTTACGCCGACCATAACTGTTGGGAGAGGCCGGA AGACATGGACACATCCAGAGCCGCATTCGCCGTCAGCAAAGAATTCCCCGGATCGGAAGTATCCGGTGAGATCGCTGCCGCTCTTGCCGCTTCCTCCGTT GCGTTTCGAGGAGTCGACCGGCTGTACTCTGCCAAGCTGCTAGGCAGGGCTTCCACGGTCTTCAGATTTGCCGATAGTTACCGTGGGTCCTACAATTCGG CCATCGGGAAGTGGGTCTGTCCTTTCTACTGCAACTACGGTGGCTACGAGGACGAATTGGTGTGGGCGGCGGCGTGGCTGTTCAAGGCAACAAAGGGGGC AAACTACTGGAGCTACGTCGTTGAGAACGCCGGTGAATTGAATAAGATGGAGCTGAAGAGTGTAGATGGGTTCACTTATTCCGGCGGAACTTTTGGAGAG TTCGGTTGGGATACTAAAACGGCAGGGATTAACGTCCTCGTCGCAAGGATGTTGAAACCCAAAAACGCCACCGACGCCACCGGATTCTCCCTCAACGCCG ACAAGTTCATATGCTCTGTTCTACCGGAGTCCCCCACCGTCGGAGTCCAATACTCCCCGGCCGGCCTTTTATTCAAATCCGGCGGGAGCAACATGCAACA CGTGACGGCTCTATCATTCCTCTTCATCACCTACGCGCGTCACCTCCAGCGTTACAAGCGCGTGTTGAATTGCGGACACGTGGCGATCAACCACGGCAGG CTCCTGAACTTTGCCAGAGGCCAAGTGGATTACTTGTTAGGAAGCAATCCGTTGAAGATGTCGTACATGGTGGGGTACGGCACCAAATTCCCAAAGAGGA TTCACCATCGAGCCTCGTCTCTACCGTCGGTGGAGAAGCATGGGGAGCGAATAGATTGTCACGGAGGGTCTTCATACTTTATGAGCGAGAATCCGAATCT TAATCAGCTTATTGGTGCTGTCGTTGGCGGCCCTGATTTAAGGGATGCCTATGATGATTCTAGAGCTGATTTTGTGCATTCCGAACCGACCACTTACATC AATGCACCGTTGGTTGGCGTATTGGGTTATTTCAAATCGCATCCATCCATACGATCTCAATCAATATTTGACGATGATGTTTCTTAG
AA sequence Show only first row Show all	>Lus10027201 pacid=23145354 polypeptide=Lus10027201 locus=Lus10027201.g ID=Lus10027201.BGIv1.0 annot-version=v1.0 MGLLERSVAAVMVIMMMAVVVESAVEPIRHDYGDALSKCILFFEGQRSGKLPSNQRMIWRKDSGLRDGFQIDKSLKGSFPRPADLVGGYYDAGDNVKFNF PMAFSTTMLAWSVIEFGKMMGPIEKQHALEAIRWATDYFLKATAIPGVVFAQVGDPYADHNCWERPEDMDTSRAAFAVSKEFPGSEVSGEIAAALAASSV AFRGVDRLYSAKLLGRASTVFRFADSYRGSYNSAIGKWVCPFYCNYGGYEDELVWAAAWLFKATKGANYWSYVVENAGELNKMELKSVDGFTYSGGTFGE FGWDTKTAGINVLVARMLKPKNATDATGFSLNADKFICSVLPESPTVGVQYSPAGLLFKSGGSNMQHVTALSFLFITYARHLQRYKRVLNCGHVAINHGR LLNFARGQVDYLLGSNPLKMSYMVGYGTKFPKRIHHRASSLPSVEKHGERIDCHGGSSYFMSENPNLNQLIGAVVGGPDLRDAYDDSRADFVHSEPTTYI NAPLVGVLGYFKSHPSIRSQSIFDDDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Lus10027201 [exp]	0	1
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	7.0	0.9486
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	7.1	0.9281
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	7.6	0.9486
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	8.7	0.9405
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	13.6	0.9387
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	15.0	0.9294
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	15.3	0.9367
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	16.9	0.9380
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	19.6	0.9366
					Lus10005247 [exp]	20.5	0.9149

Compare expression of checked genes

Lus10027201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.