Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 592 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 492 / 4e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 478 / 1e-163 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 469 / 8e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 422 / 2e-143 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G23200 421 / 5e-142 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 419 / 1e-140 ATPME3 pectin methylesterase 3 (.1) AT1G11580 414 / 5e-139 ATPMEPCRA methylesterase PCR A (.1) AT1G53830 412 / 3e-138 ATPME2 pectin methylesterase 2 (.1) AT5G53370 410 / 4e-137 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 924 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 788 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 652 / 0 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 466 / 6e-160 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 456 / 1e-155 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 454 / 7e-155 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 448 / 2e-152 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10027203 [exp] 442 / 4e-150 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 439 / 7e-149 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126800 [exp] 665 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 661 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 593 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 588 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 533 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 531 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 498 / 2e-172 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 475 / 3e-163 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 447 / 6e-152 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 446 / 3e-151 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027202 pacid=23145483 polypeptide=Lus10027202 locus=Lus10027202.g ID=Lus10027202.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAAATCTATTACTCTTGATCTCCTTCTTCTTCTTCTCGATTTCGTCGCTTTTTGTCGTTTCCCTCTCCTCGAAACCCTCCCTCCACGACC TCAAATGGTGGTGCGACCATACCCCGTATTCCGACACATGCCACCACTTCCTCACTGCGGGCAATAACCCGCAATTCACCACAACCACCCTCTCCTCCTC CTCCGCCTCCTTGATTTCCCGACCGGCGTTTCGCAAAACGGCGATCAAACTAGCCATGGGCCGGGCCGAGACTGCTCAGGCCCATAACTATAGATTAGGC CCGAAGTGTCGTAGCAAGAAGGAAAGAGCGGCATGGGCAGACTGTCTAACTCTTTATAATGACCTTGTTTCGCACCTGAATACAACCCTTACGAACACCA GATGCACCGACTTCGACTCCCAGACATGGCTCAGCGCCGCACTGACGGACCTCGAGACATGTCGGACCGGGTTCTCGGAACTTGGGTTGTCCGGTTCGCC CGTCCTTCCCAACAACTACAACAACGTTTCTAAGCTTCTTAGCAATGCCCTCTCTTTGTCCAGTTATAATGCCACAAGTTTTGTTGCCACCTCATCAGTT GATTCAGACGGATTTCCGAGTTGGGTGAGTGCCGGCAACCGAAGGCTACTGCAGGCGGGCGGTTCAATACCACCGGCGAATATCGTGGTGGCACAAGATG GGTCAGGAGAATTTAGGACGGTGAAGGAAGCGATTGTGGCCGCAGGGAAAAGGCAAAAGAGTGGCAGTAGGTTTGTGATAAGGATTAAGAGTGGGGTTTA CAAGGAGAACGTCGAGATTGGGAAGAAACTGAAGAACATAATGTTAGTTGGAGATGGTATGAAGAGTACAATTATCACCGGTAGTCGGAGCGTCGTCGGG GGGTCTACTACTTTCAACTCCGCCACAGTTGTGGTGACCGGCGACGGCTTCATCGCCCGGGACATAACCTTCCGGAACACCGCCGGGGCCCGAGACATCA CCTCCCGGACCACCGCTGGCGCCAAAAACCACCAGGCGGTAGCCCTCCGGTCAGGCGCCGACCTCTCGGTCTTCTACAAGTGCGGCTTCGAAGGCTACCA GGACACGCTCTACGTGCACTCCAACCGCCAGTTCTACCGCGAGTGCGACATCTACGGTACGGTGGACTTCATCTTCGGTAACGCTGCCGCCGTCCTCCAG AACTGTAATATCTTCGCGCGCCGGCCGATGGACAAGCAGAAGATCACGGTCACCGCACAGGGCCGAACAGACCCGAACCAGAACACGGGGATTTCGATCC ACAACTCACGGGTCGTGGCCGGTTCGGACCTCAAACCGGTTCTCGGCACGTTCAAGACTTTCTTGGGCCGGCCGTGGCAGGCTTATTCTAGGACGGTGTT CATGCAGACATTCCTCGACTCGCTGGTTGATCCGGCCGGTTGGTTGGAGTGGAACGGGAATTTCGCGTTGAAGACTTTGTATTACGGTGAGTATAGGAAT ACGGGTCCTGGAGCCCCGACGGGTGGGCGAGTGAAGTGGGCCGGGTACCGGGTTATTTCGAGCGCGACTGAAGCGGGCCGTTTTAGTGTGGGGAATTTTA TTGCCGGAGGGTCTTGGATTTCTCGAACAGGGATCCCGTTTACATCTGGGCTTTAG
AA sequence Show only first row Show all	>Lus10027202 pacid=23145483 polypeptide=Lus10027202 locus=Lus10027202.g ID=Lus10027202.BGIv1.0 annot-version=v1.0 MASSNLLLLISFFFFSISSLFVVSLSSKPSLHDLKWWCDHTPYSDTCHHFLTAGNNPQFTTTTLSSSSASLISRPAFRKTAIKLAMGRAETAQAHNYRLG PKCRSKKERAAWADCLTLYNDLVSHLNTTLTNTRCTDFDSQTWLSAALTDLETCRTGFSELGLSGSPVLPNNYNNVSKLLSNALSLSSYNATSFVATSSV DSDGFPSWVSAGNRRLLQAGGSIPPANIVVAQDGSGEFRTVKEAIVAAGKRQKSGSRFVIRIKSGVYKENVEIGKKLKNIMLVGDGMKSTIITGSRSVVG GSTTFNSATVVVTGDGFIARDITFRNTAGARDITSRTTAGAKNHQAVALRSGADLSVFYKCGFEGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAAVLQ NCNIFARRPMDKQKITVTAQGRTDPNQNTGISIHNSRVVAGSDLKPVLGTFKTFLGRPWQAYSRTVFMQTFLDSLVDPAGWLEWNGNFALKTLYYGEYRN TGPGAPTGGRVKWAGYRVISSATEAGRFSVGNFIAGGSWISRTGIPFTSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	0	1
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	1.4	0.9869
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	3.0	0.9724
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	4.5	0.9799
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	7.7	0.9626
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	12.7	0.9697
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	13.8	0.9697
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	14.7	0.9702
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	16.1	0.9684
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	19.4	0.9553
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	19.4	0.9664

Compare expression of checked genes

Lus10027202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.