Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 555 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 520 / 3e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 514 / 1e-178 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 474 / 4e-163 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 395 / 7e-133 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT3G14310 359 / 2e-117 ATPME3 pectin methylesterase 3 (.1) AT3G49220 356 / 3e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 355 / 9e-116 ATPME2 pectin methylesterase 2 (.1) AT1G11580 353 / 2e-115 ATPMEPCRA methylesterase PCR A (.1) AT3G60730 345 / 1e-112 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038918 [exp] 804 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 758 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 716 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 690 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 591 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 577 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 467 / 6e-160 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 455 / 2e-156 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 439 / 9e-150 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 586 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 555 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 523 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 507 / 5e-176 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 489 / 5e-169 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 477 / 2e-164 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 438 / 3e-149 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 433 / 6e-147 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 367 / 2e-120 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 365 / 5e-120 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027203 pacid=23145458 polypeptide=Lus10027203 locus=Lus10027203.g ID=Lus10027203.BGIv1.0 annot-version=v1.0 ATGATTATGTCACTGACCATGGTATATATCCTCTTACTTAATCCGCTGACCATCGTTCTACTTTCGAGTACTTTCTATCTCGTCGATTCTTCTTCGAAAG TCGATCTGATCACCTCATGGTGCTACGAAACTCCAAACCCAGATGCATGCATCGCTCACTCCATGGCTCAAACCCATAAGGTCAACTCCAACAACGACAA TGAGCTCATCCAGAGGACGGATTTTCGAAAAATGACCATCGAAGCTGCCCTTCATAGGGCGGTCATTGTGGAAAGTCAACTCGTTGACCTAACATCCAAG TGTCGAAATCCACGGCAGTCAACGGTGTGGGGAGACTGCAGGAAACTCCACGCCAGCACCATCCGCCACCTGAACGCCACGTTGGAGTGCCTCCATGGCC AGGTCATCAAACCAACCACGACGAGCCAATGTACCAACTTAGACGCGCAGACGTGGCTGAGCAGCGCGCTGACCAACATCGATACGTGCACATCGGGGTC GACGGACCTCAACGAGGAAAACTTCATAACCCCGATGATCAAGTCGAGCAATTTGTCGGAGCTGATCACCAACACGCTGGCGGTCAACGGGGCGATACTG GCGGAAGAAGAGGAGAGGGAGAGAGTCAACGTACATGACGTGTCACGCCATGAGTGGCTTCTACGAGGCTCGATCGCCTCGTTGCGAGGGAAAGCGAATG CGGTGGTGGCGAAGGACGGTTCGGGGAAGTTCAAGAGGGTTCAAGCTGCGATCGATCTGGCAGCGAAGAGGCGGAGTTTCGGGGAGAAGTTCATCATACA TGTTAAGAAAGGTGTGTACGACGAGACCATCGACGTTTTGGAGAGTAATCACAACGTTTGGCTCGTCGGAGATGGGATCGGAGCTACTATAATTACTGGT CGGAGGAGCGTCGGGAGTGGAGCTTACACCACGTTCAGCTCCGCCACCGCCGGTATAGATGGGGCCCGCTTCGTAGCGCGTGGAATCACGTTTCGAAACA CGGCAGGCCCCACAGGCTGGCAAGCGGTGGCCGTCCGGTCAGGCTCCGACCTAGCCGTCTTCTACCGTTGCAGCTTCGAAGCTTACCAGGACACCCTCTT CATCCACTCCCAACGCCAGTTCTTCCGCGAGTGCCACGTGTCCGGCACGGTGGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGAACTGCCTCATA TTTGTACGCCGCCCGATGAGCAACCAGACCAACTACATCACCGCGCAGGGGAGGCTCAACCCTTTCGAGCACACCGGAATCTCGATCCACAACTCCAAGA TCATGCCGGCGCCGGAGCTCAAGCCGGTCGTCGGGAAGTTCCGGATTTACTTGGGACGACCGTGGATGAAGTTCTCGAGGACCGTCGTCATGAAGAGCTA TCTGGACGGAATGATCGCTCCGTCCGGTTGGTCCAGGTGGAACAATCGGAGTTTTGCTCTGAGTACTTTGTATTATGCAGAGTACAAGAATTATGGTCCC GGAGCTTCGACAAAGTCTAGGGTGAAATGGAAAGGGTTTCGGGTCATTCGAGATAGCAAAACGGCGAAACGTTTCACCGTCGGCGGATTTTATGTCGACC GTTCTTGGTTGTCGTCCACCGGAGTTCCCTTTGTCGCTGGCCTTTAG
AA sequence Show only first row Show all	>Lus10027203 pacid=23145458 polypeptide=Lus10027203 locus=Lus10027203.g ID=Lus10027203.BGIv1.0 annot-version=v1.0 MIMSLTMVYILLLNPLTIVLLSSTFYLVDSSSKVDLITSWCYETPNPDACIAHSMAQTHKVNSNNDNELIQRTDFRKMTIEAALHRAVIVESQLVDLTSK CRNPRQSTVWGDCRKLHASTIRHLNATLECLHGQVIKPTTTSQCTNLDAQTWLSSALTNIDTCTSGSTDLNEENFITPMIKSSNLSELITNTLAVNGAIL AEEEERERVNVHDVSRHEWLLRGSIASLRGKANAVVAKDGSGKFKRVQAAIDLAAKRRSFGEKFIIHVKKGVYDETIDVLESNHNVWLVGDGIGATIITG RRSVGSGAYTTFSSATAGIDGARFVARGITFRNTAGPTGWQAVAVRSGSDLAVFYRCSFEAYQDTLFIHSQRQFFRECHVSGTVDFIFGNAAAVFQNCLI FVRRPMSNQTNYITAQGRLNPFEHTGISIHNSKIMPAPELKPVVGKFRIYLGRPWMKFSRTVVMKSYLDGMIAPSGWSRWNNRSFALSTLYYAEYKNYGP GASTKSRVKWKGFRVIRDSKTAKRFTVGGFYVDRSWLSSTGVPFVAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	1.7	0.8405
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	5.0	0.7985
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	6.0	0.8099
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	7.7	0.8120
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	8.5	0.7494
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	9.5	0.7376
					Lus10016424 [exp]	10.9	0.8278
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	11.0	0.7307
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	11.8	0.7065
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	12.2	0.7931

Compare expression of checked genes

Lus10027203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.