Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 504 / 1e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 493 / 2e-167 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 484 / 5e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 401 / 7e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 346 / 4e-112 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G11580 327 / 8e-104 ATPMEPCRA methylesterase PCR A (.1) AT1G23200 324 / 1e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 308 / 6e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 301 / 2e-94 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 301 / 4e-94 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038918 [exp] 755 / 0 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 689 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 687 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 664 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 552 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 538 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 434 / 4e-145 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 412 / 8e-138 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 413 / 4e-137 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 543 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 528 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 479 / 2e-163 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 465 / 9e-158 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 424 / 8e-142 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 414 / 5e-138 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 397 / 5e-131 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 395 / 2e-130 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 322 / 6e-102 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.003G072800 [exp] 321 / 5e-101 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027204 pacid=23145498 polypeptide=Lus10027204 locus=Lus10027204.g ID=Lus10027204.BGIv1.0 annot-version=v1.0 ATGCTCGATCGAGGGCTACCAAGACACATTATTCATCCACTCCCAGCGCCAGTTCTACCGGGACTGCTACATCCCCAGCACGATCGACTTCATCTTCGAC AACGCCGCCGCCGTCTTCCAGAACTGCGTAATCTCCCCCCACAGGCCACTCCACGGCCAGGCGAACATGATCACCGCCCAGGGGCGGAACAACCCATTCC AGAACACGGGGATCTCGATCCACAACTCGAAGATCGTACTTGCCCCGGACCTCTGACCAGTGGTCCGGACGGTGAAGACGTATCTCGGTCATCCGTGGAT GCAATATGCGCGGACGGTTCATCTACCCGAAGGGATGGTGAGAGTGGCGGGAGTATTCAAATGTCGGGATTAAGACGTACTTTGGGGAGTATAAGAATTT CGGGGCAGGGCTTCGACCCGGTGGCGGGTCCGGTGGCCCGGGTTTCATGCGATGAAGTCGGCCCCGTGAAGCGTCAAGTTAAGTCTTCAGAGACCGGTCT GATTACCTCATGGTGCAGCGAAACACCACATCCTGATGCTTGCACTCATTTCGTGACACGGACCCAACAGACGTCAATGGCGCCCAGCCGGAGGTCCTTA TTTCGAAAAATGGTTATCGAAGCAGCGTTGAGCAAGGCGCTCGACGTGGAAGGTCAACTAGTAAACCTCACTTCAAAGTGTAGGAACCCAAGACAATCAA TAGTGTGGAGTGACTGCAGGAAGCTCCACGCCAACACCATCCGCCACCTCAATAGCACGCTCCAGTGCCTCCATGGCAGGGTCGACGATTCTGCCGTGGA GACTCTGTGCTCCGATTTGGATGCCCAAACGTGGTTAAGCAGCGCCCTGACCAACGTGGAAACATGTCGGTCAGGGTCAACAGATCTGAACGTTTCGGAC TTCATCTCCCCGATGATCGAGTCTAGCAACCTGTCGGAGCTGATCACCAATACATTAGCGGTCAACGGGGCATTACTTGCCAATAACGAAGCAAATGAAA AGGTCAACGTAGAGAACCATATCCACGTGTCGTCCTCTGTTGACTGGGGCTTGGGCGAGAAGCGGAAAGTTCTAGAAGGTTCCATCACCTCGTTACATTT AAAGGCGAGTGTCGTGGTGGCGAAGGACGGTTCCGGGAAGTTCAAGACGGTTCAGGCGGCCATTGATTGGGCGGCTAAGAGGCACAACTTTAAGGAGAAG TTCGTCATACGAGTTAAGAGAGGGATTTACAAGGAGAACATTAAGGTTTTGGATAGTAATCACCACGTTTGGCTCGTCGGAGATGGGATCGGAGTTACTA TCATCACTGGCGGCCGTAGCGTTGGGAGTGGATCCTACACCACGTTCAGAATCGATGGTGCACACTTCGTAGCACGAGGAATAACCTTCCGGAACACCGC GGGACCTACAAAACGACAGGCGGTCGCCCTCCGGTCAGCGTCCGACCTCGCGGTCTTCTACCGGTGCAGCTTCCAAGGCTACCAAGACACTCTCTTCATC CAAACCCAGCGTCAGTTCTTCCGTGAGTGCCACGTGTCCGGCACGGTCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGAACTGTATGATCTTCG TCCGCCGCCCCATGGTCGGACAGGCCAACATAATCACGGCGCAGGGGAGGCTCAACTCGTTCGAGCACACCGGGATATCAATCCACAACTCGAGGATCGT GCCCTCGCCGGAGCTCAAGCCGGTGTCCCGGAAGTTCCGCACGTACTTGGGACGGCCGTGGATGAAGTACTCGAGGACCGTTGTGATGAAGAGTTATTTG GACGGAATGGTTGAACCGTCCGGTTGGTCAAAATGGGGAAACTCGGATTTCGGTTTGAGTACTTTGTATTTTGGTGAGTATAAGAATTTTGGGCCCGGTG CTTCGACCAAGTCCAGGGTGAGGTGGAAAGGGTTTCATGTGATTGGTGAACGTGTTACGGCGGAGAGGTTTACCGTTAACGGGCTTTACGCCGGACGGTC TTGGCTGCCGCCGACTGGTGTTCCGTTCGTCGCCGGCCTATAG
AA sequence Show only first row Show all	>Lus10027204 pacid=23145498 polypeptide=Lus10027204 locus=Lus10027204.g ID=Lus10027204.BGIv1.0 annot-version=v1.0 MLDRGLPRHIIHPLPAPVLPGLLHPQHDRLHLRQRRRRLPELRNLPPQATPRPGEHDHRPGAEQPIPEHGDLDPQLEDRTCPGPLTSGPDGEDVSRSSVD AICADGSSTRRDGESGGSIQMSGLRRTLGSIRISGQGFDPVAGPVARVSCDEVGPVKRQVKSSETGLITSWCSETPHPDACTHFVTRTQQTSMAPSRRSL FRKMVIEAALSKALDVEGQLVNLTSKCRNPRQSIVWSDCRKLHANTIRHLNSTLQCLHGRVDDSAVETLCSDLDAQTWLSSALTNVETCRSGSTDLNVSD FISPMIESSNLSELITNTLAVNGALLANNEANEKVNVENHIHVSSSVDWGLGEKRKVLEGSITSLHLKASVVVAKDGSGKFKTVQAAIDWAAKRHNFKEK FVIRVKRGIYKENIKVLDSNHHVWLVGDGIGVTIITGGRSVGSGSYTTFRIDGAHFVARGITFRNTAGPTKRQAVALRSASDLAVFYRCSFQGYQDTLFI QTQRQFFRECHVSGTVDFIFGNAAAVFQNCMIFVRRPMVGQANIITAQGRLNSFEHTGISIHNSRIVPSPELKPVSRKFRTYLGRPWMKYSRTVVMKSYL DGMVEPSGWSKWGNSDFGLSTLYFGEYKNFGPGASTKSRVRWKGFHVIGERVTAERFTVNGLYAGRSWLPPTGVPFVAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	3.0	0.8969
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	4.2	0.8969
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	5.2	0.8969
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	6.0	0.8969
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	6.7	0.8809
					Lus10014650 [exp]	7.7	0.8767
AT2G21100			Disease resistance-responsive ...		Lus10034476 [exp]	8.1	0.5767
					Lus10027457 [exp]	8.4	0.8758
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	8.9	0.8703
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	9.5	0.8556

Compare expression of checked genes

Lus10027204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.