Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70710 582 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 575 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 540 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT4G39010 535 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT1G02800 518 / 0 ATCEL2 cellulase 2 (.1) AT4G39000 482 / 2e-167 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G71380 472 / 1e-163 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 467 / 7e-162 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G23560 445 / 3e-153 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 443 / 2e-152 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027201 [exp] 826 / 0 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1) Lus10029071 [exp] 560 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10031718 [exp] 535 / 0 AT1G70710 498 / 7e-174 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 530 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10031139 [exp] 526 / 0 AT1G70710 489 / 5e-170 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10018077 [exp] 523 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10038223 [exp] 520 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10042071 [exp] 520 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10034199 [exp] 496 / 3e-173 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127900 [exp] 704 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 604 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 572 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 569 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 539 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 533 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.002G202400 [exp] 530 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 528 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.019G069300 [exp] 506 / 5e-177 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G083200 [exp] 477 / 1e-165 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10027205 pacid=23145400 polypeptide=Lus10027205 locus=Lus10027205.g ID=Lus10027205.BGIv1.0 annot-version=v1.0 ATGGCTATGGCGGCAATGATGATGGTGGTGGGAAGTGTGACGGCTTCACATGAATACGGCGATGCATTGTCGAAATGTATATTGTTCTTCGAAGGGCAGA GGTCGGGGAAGCTCCCTTCTAATCAGAGGATGACTTGGAGGAGAGATTCTGGTCTTCGTGATGGCTTCGAAATTGGCGTTGACCTCGTCGGCGGCTATTA CGATGCCGGCGACAACGTGAAATTCAACTTCCCGATGGCGTTCACAACCACAATGCTGGCCTGGAGCGTGGTTGAATTCGGCACGATGATGGGTCCGGTC GAGAAGCAGCACGCCCTTGAAGCGATCCGGTGGGGCACCGATTACCTCCTCAAGGCCACAAGCGTCCCCGGATTCGTCTTCGCTCAGGTCGGAGACCCTT ACGCCGACCACAACTGCTGGGAGAGACCCGAAGACATGGACACCCGGCGAACTCCCTACGCCGTCAGCAAAAACTTCCCCGGATCGGAAGTCTCCGGCGA GATCTCCGCCGCCCTCGCCGCCTCCTCCGTGGCGTTCCGCGGCGTTGACCGGATGTACTCCGCCAAACTGCTCAGTAGGGCTTCCACGGTTTTCAAATTT GCTGATACTTACCGAGGATCTTACAATGCGAGCATCGGAGATTGGGCCTGTCCGTTCTACTGTGACTTCAGTGGCTATGAGGACGAATTGGTGTGGGCGG CGGCGTGGATGTTCAAGGCCACCAAGGCGGAGTATTACCAGAGCTACGTCGTTAAGAACTCCGGCGAGCTAGACAAGATGGAGCTAAAGGGTATAGATGG GTTCACTTATTCCGGTGGAACTTACGGAGAGTTCGGTTGGGATACTAAAACTGCAGGGATCAACGTCCTCGTTGCAGGGATGCTAACACCCAGCAACGTC ACTCAAACGACATCATTCGGACCAAACGCCGACAGATTTGTGTGCTCTATTTTGCCGGAATCTCCCACCGTCGCCGTGCAATACTCCCCCGGCGGCCTGT TGTTCAAGCCTGGTGGTAGCAACATGCAGCACGTAACGGCGTTATCTTTCTTGTTCATCGCCTACGGTCGCCACCTTCAACGTTACAAGCGTGTGGTTCA TTGCGGCGATGTGGTTGTCGAGCACGACAGGCTCTACAATTTCGCCAGAACCCAGGTGGACTACTTGCTTGGAACCAATCCATTGAAGATGTCGTACATG GTGGGGTACGGGCCCAAGTTCCCGCAGAGGATTCACCATCGAGCCTCGTCTTTGCCGTCAATTGAAAAGCATCGAGAGCGAATAGACTGCCAAGGAGGGA CTTCATACTTCATGAGCCCGAACCCAAACCCTAATCAGCTTACTGGTGCTATCGTCGGAGGTCCTGATATACATGACGCTTATGATGATTCCAGGGCGGA TTTTGTGCACTCCGAACCAACCACTTATATCAATGCGCCCTTGGTTGGTGTGTTGGGTTATTTTAAATCACATCCTTAG
AA sequence Show only first row Show all	>Lus10027205 pacid=23145400 polypeptide=Lus10027205 locus=Lus10027205.g ID=Lus10027205.BGIv1.0 annot-version=v1.0 MAMAAMMMVVGSVTASHEYGDALSKCILFFEGQRSGKLPSNQRMTWRRDSGLRDGFEIGVDLVGGYYDAGDNVKFNFPMAFTTTMLAWSVVEFGTMMGPV EKQHALEAIRWGTDYLLKATSVPGFVFAQVGDPYADHNCWERPEDMDTRRTPYAVSKNFPGSEVSGEISAALAASSVAFRGVDRMYSAKLLSRASTVFKF ADTYRGSYNASIGDWACPFYCDFSGYEDELVWAAAWMFKATKAEYYQSYVVKNSGELDKMELKGIDGFTYSGGTYGEFGWDTKTAGINVLVAGMLTPSNV TQTTSFGPNADRFVCSILPESPTVAVQYSPGGLLFKPGGSNMQHVTALSFLFIAYGRHLQRYKRVVHCGDVVVEHDRLYNFARTQVDYLLGTNPLKMSYM VGYGPKFPQRIHHRASSLPSIEKHRERIDCQGGTSYFMSPNPNPNQLTGAIVGGPDIHDAYDDSRADFVHSEPTTYINAPLVGVLGYFKSHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	0	1
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	1.4	0.7984
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	7.2	0.6953
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	8.6	0.7237
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	9.0	0.7155
AT1G45063			copper ion binding;electron ca...		Lus10020276 [exp]	9.5	0.6808
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	14.1	0.6667
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	14.3	0.6870
					Lus10020958 [exp]	18.1	0.6674
					Lus10021906 [exp]	19.2	0.6674
					Lus10003695 [exp]	20.2	0.6674

Compare expression of checked genes

Lus10027205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.