Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 495 / 3e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 467 / 7e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 464 / 1e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 425 / 2e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 404 / 2e-135 ATPME3 pectin methylesterase 3 (.1) AT1G23200 394 / 3e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 393 / 2e-131 ATPME2 pectin methylesterase 2 (.1) AT4G00190 383 / 9e-129 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT5G53370 386 / 1e-128 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 382 / 3e-127 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 639 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 625 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 603 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 426 / 2e-144 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 423 / 2e-143 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 416 / 1e-140 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 412 / 1e-139 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 405 / 4e-136 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10008203 [exp] 398 / 9e-134 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126800 [exp] 576 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 571 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 508 / 5e-177 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 492 / 8e-171 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 476 / 9e-165 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 469 / 1e-161 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 466 / 1e-160 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 439 / 5e-150 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 439 / 4e-149 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.011G025400 [exp] 421 / 1e-142 AT1G11580 638 / 0.0 methylesterase PCR A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027206 pacid=23145380 polypeptide=Lus10027206 locus=Lus10027206.g ID=Lus10027206.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCCTCCGGCAATGATCTCGAATGGTGGTGTGACCAAACTCCATACCCGAATCCATGCAAACGCCTCATGATCCGTCCGAACATGCATTCCG GTCATTCCTTTGCCGGATGTTCAATCTATTATGCTGAATTTCGCAGAAGGATGATCAAGCTCGCTATGGACCAGACCAACACTGCCATGGCCCACAACAT CAATCTCGACACAAAGAGTCACCATGAGAAGGAACTTGCCACATTGGCCGACTGCTTAACTCTTTACGACGATGTCGTTTTTCACCTTAATAAAACTCTC ACAAATACTAAACATACAAACTTTGACGTTCAGACCTGGCTCAGCACTGCCCTCACCGATCTTGATACTTGTCAAAATGGATTTTGGGAGCTCGGTTTGT CAAATTCATCCCTCCTTCCCGGTAACCACGACGATATTTCTAAGATGCTCAGTAATGCTTTGGCCATCTCCAATTACGACTCAGGAAACAATGTTGACAT CTTATCGGTTGACCAAGATGGGTTCCCGAGCTGGCTGACGGCCGGCGACAGGAGGCTGCTGCAGTCAGGTGCGGAGCTGACGGCGGATCTCGTGGTGGCA AAAGATGGATCGGGGAATTTCAGGACGGTGAAAGAAGCGGTGGCTGCGGCAGAGGCAAGGCAGAGGAGTGGCAGGTTTGTGATAAAGATTAAAAGTGGGA TTTATGAGGAGAACGTCGAAATTGGGAATAAACTTAAGAACATAATGCTGATCGGAGATGGGATGAAGAGTACTGTAATCACTGGTAGCCGGAGCGTTGG CGGTGGCTCTACCACTTTCAATTCTGCAACTATTGTTGTGACCGGCGAGGGATTTATTGCCAAAGAAATAACCTTCCGGAACACTGCCGGTCCACAGAAT GGCCAGGCAGTTGCCCTCCGATCAGGCGCCGACCTCTCAGCCTTCTACCGGTGCAGCTTCGAAGCCTACCAAGACACCCTCTACGTCCACTCCAACCGCC AATTCTATAAAGAATGCTCAGTCTCCGGCACGGTGGACTTCATCTTTGGCAACGCCGCAGCCGTCCTCCAGAATTGTTATCTCTACGCGCGGCGGCCAAT GTCGGGGCAAGGGATCATGGTCACGGCACAGGGTCGAACCGACCCGAACCAGAACACGGGCATTTCGGTCCACAACTCACTGGTTGAGGCCAGTCCGGAT TTGGAACCGGTTATCGGTTCGTTCAAGACGTATTTGGGCCGGCCGTGGAAGGAGTACTCGAGGACGGTCTTCATGCAGACCTATCTCGGTTCGTTGGTTC AACCGGCGGGTTGGTCGCCTTGGGATGGGGATTTTGCTTTGAAGACTCTGTATTACGGGGAGTATAAGAATACGGGTCCTGGAGCTCCGACTGGGAATAG AGTGAAGTGGGCCCGGGTTATCACGAGTGCCGATGAAGCGGTGCGTTTTAGCGTGGGGAATTTTATTGCTGGACAGTCTTGGATTCCTGGTACTGGGATT CCATTTACAGCTGGGCTTTAG
AA sequence Show only first row Show all	>Lus10027206 pacid=23145380 polypeptide=Lus10027206 locus=Lus10027206.g ID=Lus10027206.BGIv1.0 annot-version=v1.0 MALSSGNDLEWWCDQTPYPNPCKRLMIRPNMHSGHSFAGCSIYYAEFRRRMIKLAMDQTNTAMAHNINLDTKSHHEKELATLADCLTLYDDVVFHLNKTL TNTKHTNFDVQTWLSTALTDLDTCQNGFWELGLSNSSLLPGNHDDISKMLSNALAISNYDSGNNVDILSVDQDGFPSWLTAGDRRLLQSGAELTADLVVA KDGSGNFRTVKEAVAAAEARQRSGRFVIKIKSGIYEENVEIGNKLKNIMLIGDGMKSTVITGSRSVGGGSTTFNSATIVVTGEGFIAKEITFRNTAGPQN GQAVALRSGADLSAFYRCSFEAYQDTLYVHSNRQFYKECSVSGTVDFIFGNAAAVLQNCYLYARRPMSGQGIMVTAQGRTDPNQNTGISVHNSLVEASPD LEPVIGSFKTYLGRPWKEYSRTVFMQTYLGSLVQPAGWSPWDGDFALKTLYYGEYKNTGPGAPTGNRVKWARVITSADEAVRFSVGNFIAGQSWIPGTGI PFTAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	0	1
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	1.0	0.8632
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	4.2	0.8163
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	7.4	0.8117
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	8.4	0.8079
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	10.7	0.7339
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	11.8	0.8359
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	16.2	0.8141
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	18.4	0.7700
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10018258 [exp]	19.6	0.7117
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	22.5	0.7865

Compare expression of checked genes

Lus10027206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.