Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51460 514 / 0 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 453 / 9e-160 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 431 / 3e-151 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 380 / 2e-131 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 379 / 9e-131 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 369 / 3e-127 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 367 / 8e-126 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G10100 366 / 9e-126 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G78090 366 / 2e-125 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT1G22210 338 / 3e-115 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038921 [exp] 716 / 0 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031146 [exp] 586 / 0 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 577 / 0 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 479 / 1e-169 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 477 / 5e-169 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019666 [exp] 392 / 4e-136 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 342 / 4e-116 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 327 / 4e-110 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 323 / 5e-109 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126100 [exp] 539 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 535 / 0 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 479 / 9e-170 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 459 / 8e-162 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G090900 [exp] 385 / 4e-133 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 383 / 2e-132 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 383 / 3e-132 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 351 / 9e-120 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 333 / 6e-113 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 265 / 7e-87 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10027208 pacid=23145409 polypeptide=Lus10027208 locus=Lus10027208.g ID=Lus10027208.BGIv1.0 annot-version=v1.0 ATGGACTTCAAATCCAACCACACTGCTCCTGTTCTCACTGATTCCGCACCCATACCCAATTCAAGATTGCATTCTCCTTTGCTGACATGCACAACCTCTG GAGCTACATTCTCGACAAATCTGTTATTAACTGTCCCAAGGAAGAAAGCTGGATTACTGGACGATGTACGCACCAGCAGCTGGCTAGATGCTATGAAAGC ATCTTCTCCTCCTCCTAGGCGGCTAACCAAAGATCAGAACAATTTCTCTTCTGATGACAGTGGTTACTCTAACTGGCTGGTTAATTATCCATCAGCTCTT GCATCTTTTGATCAAATTGCGAAAATAGCAAGTGGCAAAAGGATAGCTCTGTTCCTGGACTACGATGGGACTCTTTCACCCATCGTTGACAACCCTGACT GTGCCTTCATGTCTAACGAGATGCGATCCGCTGTAAAACAGGTCGCGGAATGCTTCCCAACCGCAATAATCAGTGGAAGAAGTCGCGACAAGGTGTACGA ATTCGTAGGTCTAACTGAACTGTACTACGCCGGTAGCCACGGGATGGACATAATGAGTCCCCCCGTTAGAGATTCCGTAACTGCCGACAAGGAAGTGAAC CTTTTCCAGCCAGCTAGCGAGTTCTTACCCATGATCGACGAGGTTTTTAATTCCCTTGTGGAGATCACTGGAGGGATTAAAGGCGCCAAAGTTGAAAACA ACAAGTTCTGCGTCTCCGTACATTACCGCAACGTAGATGACAAGTATTGGGACGTAGTGGCGCAATCTGTACGGAAAGTGATTGAAAACAATTCACGGCT CCGGTTGACCCACGGTAGAAAGGTTCTAGAGGTTCGACCGGTTATCGACTGGGATAAGGGGAAAGCCGTCACATTTCTGCTCGAATCACTCGGCTTGACT AACTGTGATGATGTACTTCCGATTTACGTTGGAGATGATCGGACTGACGAGGATGCATTCAAGGTGTTGCGAGAGAGGAATTGTGGATATGGGATATTGG TGTCATCTGTGCCCAAGGAGAGCAATGCTTATTACTCCCTTAGAGATCCATCCGAGGTGATGGAGTTTCTGAAGTCGCTGGTGATGTGGAAGCAAGCCAA GTGCTTCGTCGATACGAAAAAGGACTGA
AA sequence Show only first row Show all	>Lus10027208 pacid=23145409 polypeptide=Lus10027208 locus=Lus10027208.g ID=Lus10027208.BGIv1.0 annot-version=v1.0 MDFKSNHTAPVLTDSAPIPNSRLHSPLLTCTTSGATFSTNLLLTVPRKKAGLLDDVRTSSWLDAMKASSPPPRRLTKDQNNFSSDDSGYSNWLVNYPSAL ASFDQIAKIASGKRIALFLDYDGTLSPIVDNPDCAFMSNEMRSAVKQVAECFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIMSPPVRDSVTADKEVN LFQPASEFLPMIDEVFNSLVEITGGIKGAKVENNKFCVSVHYRNVDDKYWDVVAQSVRKVIENNSRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLT NCDDVLPIYVGDDRTDEDAFKVLRERNCGYGILVSSVPKESNAYYSLRDPSEVMEFLKSLVMWKQAKCFVDTKKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	0	1
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040929 [exp]	2.4	0.7447
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	5.3	0.7599
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10010895 [exp]	9.9	0.7312
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	10.1	0.7551
AT3G52740			unknown protein		Lus10022717 [exp]	13.4	0.7518
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	13.6	0.7691
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	15.5	0.7440
AT1G71110			unknown protein		Lus10034641 [exp]	17.7	0.7442
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	20.5	0.7539
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	25.0	0.7356

Compare expression of checked genes

Lus10027208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.