Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47420 652 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT4G25220 536 / 0 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT1G30560 533 / 0 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT2G13100 491 / 2e-170 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT4G17550 282 / 1e-88 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031153 [exp] 642 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10038923 [exp] 611 / 0 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10004358 [exp] 536 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040154 [exp] 532 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040002 [exp] 465 / 4e-160 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10027211 [exp] 446 / 2e-155 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 155 / 2e-45 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124200 [exp] 642 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 627 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 515 / 1e-179 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.018G115000 [exp] 490 / 6e-170 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.003G082366 [exp] 454 / 8e-156 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10027210 pacid=23145504 polypeptide=Lus10027210 locus=Lus10027210.g ID=Lus10027210.BGIv1.0 annot-version=v1.0 ATGCCTGAACAACCAGCGACAGAGACGACGACACAACCACCACCAAACCCTAAACCGATCGGAATCCGATTCCTGGAGAAGCTAAACGGGAACAAGAAGC TATCCTACAAAACCCACCAAGCCGTAGTCCTAATCGTCACATTCCTCGCATACGCCGCATACCACTCTGCAAGAAAAACAACCAGCATTGTCAAAAGCGC CCTTGACCCCAAACAATCACCCAATTCAGGCTCCTCCATCGGCCGCCGCCCCTCCGTGACGCTTCCGTGGACGTTAGGCTCCGGATGGGCGCCGTTCAAT GGGTCGGACGGGACCTCGCTTTTAGGCGAGGTCGACCTGGCTTTCTTGTCCACGTACGCTGTTGGCATGTTTTTCTCGGGACATTTAGGCGACAGGATGA ATCTACGCCTCTTTCTAACGGTAGGAATGCTCGGGACGGGTGTTTTCACCGCCCTTTTCGGGGCGGGTTTCTGGCTAGACGTCCATAGCTTCTATTACTT TTTGGCAATGCAGATGGTCGCCGGGTTGTTCCAGTCAACCGGGTGGCCATCTGTGGTTGCGGTGGTGGGGAATTGGTGCGGGAAGAAGAAGAGAGGGCTG ATCATGGGGGTTTGGAATGCTCATACATCGGTCGGGAACATTTTCGGGTCGTTGATTGCGGCCGCGATGCTGAGGTATGGGTGGGGGTGGTCATTCATTG TGCCCGGGTTCGCCATCGGGGTGGTTGGGGTTGTGGTGTTTTTGTTCTTGGGGGTTAGTCCTTCGAGCGTCGGGGCTCGAGAGGACGAGGAGGAGGAAGA CGAGGATGAGGGGAAGTTCGAGAAGAATGGCGAATTAAGCGAGAGCGATCCATTGTTGGAAGATCAGATTGAAGAGAAACCTGTTAGGTTTATTGAAGCA TGGAGGATTCCTGGTGTTGCTCCTTTTGCTGTGTGTCTCTTCTTTGCTAAGTTGGTTGCCTACACTTTCCTCTACTGGCTGCCATTCTACATCAGCCACA CAGCAATTGACGGGAAGTACATCTCGGACAGAACAGCAGGCAACATATCAACTCTTTTCGACGTGGGGGGCGTAGTGGGAGGGATCCTAGCGGGCCACAT TTCCGACCAACTCAACGCGAGAGCGATCACAGCAGCGAGCTTCATGTACTGCTCAATCCCGGCACTCTACCTCTACCGGAGCTACGGAGAGGTGTCACTG ACACTCAACATACTCTTGATGCTGCTAACGGGAATGTTCGTGAACGGTCCGTACGCCCTCATAACGACTGCAGTCTCCGCCGATTTGGGGACACACAGCT CGTTGAAGGGGAACTCGAGAGCGCTAGCTACCGTGACAGCGATCATCGATGGAACCGGGTCGGTTGGTGCAGCGATAGGGCCGTTGCTGACTGGTTACAT CTCGGCCACGAGCTGGAGTGCTGTGTTCACAATGCTGATGGGTTCAGCCTTCGTTGCCGGGTTGCTTTTGACTAGGCTTGTTGTTGCTGAGGTTGCTGCT AAGATTTCCGAGTCTCAGCAGCAGGGGAATAGTGGCTCTGGTTCTTTTCAATTGGCTGAGCTTGGTGTTTGA
AA sequence Show only first row Show all	>Lus10027210 pacid=23145504 polypeptide=Lus10027210 locus=Lus10027210.g ID=Lus10027210.BGIv1.0 annot-version=v1.0 MPEQPATETTTQPPPNPKPIGIRFLEKLNGNKKLSYKTHQAVVLIVTFLAYAAYHSARKTTSIVKSALDPKQSPNSGSSIGRRPSVTLPWTLGSGWAPFN GSDGTSLLGEVDLAFLSTYAVGMFFSGHLGDRMNLRLFLTVGMLGTGVFTALFGAGFWLDVHSFYYFLAMQMVAGLFQSTGWPSVVAVVGNWCGKKKRGL IMGVWNAHTSVGNIFGSLIAAAMLRYGWGWSFIVPGFAIGVVGVVVFLFLGVSPSSVGAREDEEEEDEDEGKFEKNGELSESDPLLEDQIEEKPVRFIEA WRIPGVAPFAVCLFFAKLVAYTFLYWLPFYISHTAIDGKYISDRTAGNISTLFDVGGVVGGILAGHISDQLNARAITAASFMYCSIPALYLYRSYGEVSL TLNILLMLLTGMFVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWSAVFTMLMGSAFVAGLLLTRLVVAEVAA KISESQQQGNSGSGSFQLAELGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	2.4	0.8838
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	5.3	0.8757
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	6.3	0.8682
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	6.5	0.8671
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	7.9	0.8724
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	10.0	0.8514
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	10.6	0.8656
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	10.8	0.8687
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	14.1	0.8552
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	14.7	0.8488

Compare expression of checked genes

Lus10027210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.