Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51410 352 / 4e-121 LUC7 N_terminus domain-containing protein (.1.2.3) AT3G03340 81 / 6e-17 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT5G17440 80 / 1e-16 LUC7 related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038924 [exp] 468 / 8e-167 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031732 [exp] 382 / 5e-133 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 365 / 1e-126 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10026846 [exp] 84 / 1e-17 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 82 / 9e-17 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124300 [exp] 380 / 4e-132 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.003G109000 [exp] 374 / 9e-130 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.019G055000 [exp] 85 / 3e-18 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.013G084800 [exp] 81 / 1e-16 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10027212 pacid=23145487 polypeptide=Lus10027212 locus=Lus10027212.g ID=Lus10027212.BGIv1.0 annot-version=v1.0 ATGGACCTCCAGAGAGCTATGCTTGACGAGCTCATGGGCGCAGCTCGTAATTTGACGGAGGATGAGAGAAAAGATTACAAGGAAATCACATGGGATTCCA AAGAGGTTTGCCCCTACTACATGGCTCGATTCTGCCCCCACGATCTCTTCGTCAACACCAAGAGCGATCTCGGGCAATGCGATAGAGTTCACGATGCCAA GCTCAAGGAAAGCTTCGAGCAGTCTCCGAGGCGCGACAAGTTCTTGCTCAAGTTTGAGTCTGATCTTGCTCAGCGGTGTGAGAAATTGGTAATGGATTTG GACAGAAAAGTTAGACGTGGACGTGAGCGTCTTGCTCAAGATGATGAACCTGGGCCGCTGACGCCAGCATCAGTTCAGAAGACTGAACAGTTAGCTGTTG TGGAAGAGAAGATAAAGAATCTCCTGGGACAAGTGGAGGACCTTGGTGAAGCTGGGAAAGTCGATGAAGCTCAAGCCCTTATGAAAAAGGTAGATGAATT GAATGCGGAGAAAGCGCTGATTCAAGCTCAGCTTGACAAAGTAGCACTTCTAGCTCAGGAGAAAAAGATGGCACTGTGTGAGATTTGCGGTTCTTTTCTG ATTGCCAATGATGCAGCAGAGAGGACGCAGTCTCACATAACAGGGAAGCAGCACATTGGTTATGGAATGGTTCGTGATTTCATCACTGAGTACAGGGAGG CGAGGGAAAAGGCGAAGGAAGAGGAACGGCAAGCTAGGGAGAAAGAGGCCGAGGAGCGAAGGAATCAACAGGAGAAAGTTCCTGAGAGGAGTAGGAGGAG TGGTTCGGGTGAAAGGGATCGGTATCCGGACCGGGATAGGTACCGTGAACGTGACTATGACAGGTCGAGAGAAAGGAACAGTAGAGGGTGGGACGGTGGA AAGGGTTCCAGGAACGGAAGGGATCGAGACAGGGATAGGCACTATAACCGGAGCAGGTCTCGTTCCCCTGCTAGGCACGGTAGAAGAAGGTCCTAG
AA sequence Show only first row Show all	>Lus10027212 pacid=23145487 polypeptide=Lus10027212 locus=Lus10027212.g ID=Lus10027212.BGIv1.0 annot-version=v1.0 MDLQRAMLDELMGAARNLTEDERKDYKEITWDSKEVCPYYMARFCPHDLFVNTKSDLGQCDRVHDAKLKESFEQSPRRDKFLLKFESDLAQRCEKLVMDL DRKVRRGRERLAQDDEPGPLTPASVQKTEQLAVVEEKIKNLLGQVEDLGEAGKVDEAQALMKKVDELNAEKALIQAQLDKVALLAQEKKMALCEICGSFL IANDAAERTQSHITGKQHIGYGMVRDFITEYREAREKAKEEERQAREKEAEERRNQQEKVPERSRRSGSGERDRYPDRDRYRERDYDRSRERNSRGWDGG KGSRNGRDRDRDRHYNRSRSRSPARHGRRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	0	1
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	2.2	0.8159
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	3.5	0.7930
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	8.0	0.8048
					Lus10030126 [exp]	9.4	0.7512
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	12.7	0.7649
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	13.0	0.7857
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	14.2	0.7713
AT1G61470			Polynucleotidyl transferase, r...		Lus10000561 [exp]	18.5	0.6702
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10038167 [exp]	20.3	0.7123
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010371 [exp]	20.4	0.7586

Compare expression of checked genes

Lus10027212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.