Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47430 173 / 3e-55 PEX11B peroxin 11B (.1) AT1G47750 44 / 8e-06 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038925 [exp] 254 / 4e-87 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10003945 [exp] 45 / 6e-06 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 45 / 7e-06 AT1G47750 318 / 4e-110 peroxin 11A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108900 [exp] 179 / 1e-57 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.001G124400 [exp] 179 / 1e-57 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.002G134000 [exp] 47 / 6e-07 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 45 / 3e-06 AT1G47750 327 / 8e-114 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10027213 pacid=23145541 polypeptide=Lus10027213 locus=Lus10027213.g ID=Lus10027213.BGIv1.0 annot-version=v1.0 ATGAGGGTGCTGGCGGTCCTGGCCAACGCTGGGGAAATGGTCTACTTCTTCTTCGATCATTTTCTCTGGCTGGCTAGGATCGGGACGCTGGACACTAGGC TGGCTCGTAGGATGAGCTTCGTGTCAGCGTTTGGGGAGTCGTTCGGGTACGTGTTTTTCGTGATTGGGGATTTGGTTATGATCCGGGAAGGGATTCGGAA GGAGAGGGAGTTGGTTCGGGTTTTGAAGGAAGGGCAGGTAGAAGGGAAGGAGGAGGATGATGAAACAGCGTCGTTGATTGCGAAGATTCGAGGGGATAGA GTGATGAGGCTGATGGGCATTGCAGCAAACCTGGCCGATTTGATTATTGCTCTGGCCGATATTGAACCGAACCCGTTTTGTAACCATACGGTTACTTTGG GGATTAGCGGGTTGGTTTCGGCTTGGGCCGGGTGGTACAGGAATTGGCCTTCCTAG
AA sequence Show only first row Show all	>Lus10027213 pacid=23145541 polypeptide=Lus10027213 locus=Lus10027213.g ID=Lus10027213.BGIv1.0 annot-version=v1.0 MRVLAVLANAGEMVYFFFDHFLWLARIGTLDTRLARRMSFVSAFGESFGYVFFVIGDLVMIREGIRKERELVRVLKEGQVEGKEEDDETASLIAKIRGDR VMRLMGIAANLADLIIALADIEPNPFCNHTVTLGISGLVSAWAGWYRNWPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	0	1
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	1.0	0.9338
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	4.2	0.8899
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	4.6	0.8616
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	4.7	0.8964
AT2G40435			unknown protein		Lus10029251 [exp]	6.0	0.8600
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	10.2	0.8557
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	13.6	0.8613
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	14.8	0.8864
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	15.6	0.8594
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	15.7	0.8511

Compare expression of checked genes

Lus10027213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.