Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45010 337 / 8e-118 PLAC8 family protein (.1.2) AT5G51400 317 / 5e-110 PLAC8 family protein (.1) AT2G40935 95 / 9e-24 PLAC8 family protein (.1.2.3) AT3G18450 59 / 2e-10 PLAC8 family protein (.1) AT3G18470 56 / 8e-10 PLAC8 family protein (.1) AT3G18460 57 / 1e-09 PLAC8 family protein (.1) AT1G49030 57 / 1e-09 PLAC8 family protein (.1) AT1G58320 55 / 3e-09 PLAC8 family protein (.1) AT1G68630 52 / 4e-08 PLAC8 family protein (.1) AT5G35525 51 / 5e-08 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038926 [exp] 468 / 4e-168 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10031733 [exp] 354 / 4e-125 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10028184 [exp] 318 / 1e-110 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10042885 [exp] 312 / 5e-108 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) Lus10005257 [exp] 79 / 1e-17 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10009036 [exp] 62 / 9e-12 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10004063 [exp] 59 / 6e-11 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10008890 [exp] 56 / 2e-09 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10021696 [exp] 56 / 3e-09 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108800 [exp] 373 / 2e-132 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.001G124500 [exp] 357 / 5e-126 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.002G141600 [exp] 309 / 7e-107 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.006G024900 [exp] 84 / 8e-20 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G109100 [exp] 70 / 2e-14 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 69 / 4e-14 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 69 / 7e-14 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 67 / 2e-13 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 64 / 3e-12 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 63 / 5e-12 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10027214 pacid=23145558 polypeptide=Lus10027214 locus=Lus10027214.g ID=Lus10027214.BGIv1.0 annot-version=v1.0 ATGGCGGACGCAGGCGGGAATTCGCGGTACGTGAAGCTGACAAAAGAGCAAGCTCCTCAGGAGGAGGACATTAAGCCAGGAGAGCTCAACCAGCCAATCG ACGTCCCTCAGTTGACTGTTCGCAAGTGTAACGAGTGTGGCCAGGCTTTGCCGGAGGATTACTTGGCGCCGACTGATGAGCCGTGGACTTCCGGGATCTT CGGATGCGCTGAAGACACTGAGAGCTGTTGGACGGGGCTGCTTTGCCCGTGTGTGCTGTTTGGCCGGAATCTAGAGAAGCTGAGAGACGATACGCCGTGG TCTACGCCATGCCTTTGTCACGCAATATGCATCGAGGGAGGACTGGCAGTAGCAGCAGTAACTGCACTCTCTCACGGTGCTATAGTTGATCCAAACACAT CGTTCCTCATATGTGAAGGTCTGTTGTTCGCTTGGTGGATGTGTGGGATATACACTGGTCTTGCTAGGCAGTCATTGCAGAAGAAGTATCACCTCAAGAA CTCCCCGTGTGACCCGTGCCTGGTGCATTGCTGCCTGCACTGGTGCGCACTCTGCCAGGAGCACAGGGAGATGAAGGGCCGCCTTTCGGACAACTTCGTC ATGCCAATGACCATCGTCAACCCACCACCTGTCCAGGAGATGTCCGCAACTGAAACCTCTACCGGAGAGAACCACCACCACAATCATTCCGCACCATCGT CTTCAGAGAACAAGAACAACAACAGCGGCGCTGCTGAGGTCCAGATGCAGGCACTATAG
AA sequence Show only first row Show all	>Lus10027214 pacid=23145558 polypeptide=Lus10027214 locus=Lus10027214.g ID=Lus10027214.BGIv1.0 annot-version=v1.0 MADAGGNSRYVKLTKEQAPQEEDIKPGELNQPIDVPQLTVRKCNECGQALPEDYLAPTDEPWTSGIFGCAEDTESCWTGLLCPCVLFGRNLEKLRDDTPW STPCLCHAICIEGGLAVAAVTALSHGAIVDPNTSFLICEGLLFAWWMCGIYTGLARQSLQKKYHLKNSPCDPCLVHCCLHWCALCQEHREMKGRLSDNFV MPMTIVNPPPVQEMSATETSTGENHHHNHSAPSSSENKNNNSGAAEVQMQAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45010			PLAC8 family protein (.1.2)		Lus10027214 [exp]	0	1
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	4.0	0.8805
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	8.1	0.8675
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10022770 [exp]	8.5	0.8580
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	8.7	0.8505
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	10.8	0.8857
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	11.0	0.8793
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	11.6	0.8801
AT5G52980			unknown protein		Lus10005024 [exp]	13.9	0.8496
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	19.6	0.8669
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	22.6	0.8576

Compare expression of checked genes

Lus10027214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.