Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47460 1623 / 0 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 1621 / 0 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT2G27170 168 / 4e-42 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G48600 96 / 8e-20 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 90 / 7e-18 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G15920 48 / 5e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038926 [exp] 193 / 5e-54 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10024895 [exp] 112 / 2e-24 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 111 / 3e-24 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10036169 [exp] 107 / 3e-23 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10030681 [exp] 93 / 1e-18 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 92 / 2e-18 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10013583 [exp] 78 / 7e-15 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10039590 [exp] 64 / 1e-09 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029476 [exp] 62 / 2e-09 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125000 [exp] 1792 / 0 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 1776 / 0 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 127 / 3e-29 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.017G083200 [exp] 95 / 3e-19 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.005G224900 [exp] 85 / 3e-16 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.001G262600 [exp] 64 / 6e-10 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10027215 pacid=23145364 polypeptide=Lus10027215 locus=Lus10027215.g ID=Lus10027215.BGIv1.0 annot-version=v1.0 ATGTACATCAAGGAGGTCTGCTTGGAGGGGTTCAAGTCCTACGCGACGAGGACGGTGGTCCAAGGCTTCGATCCGTTCTTCAACGCCATCACGGGTCTCA ACGGCACGGGCAAATCGAACATCCTCGATTCCATTTGCTTCGTCTTGGGGATAACCAACTTGCAGCAGGTTCGTGCTTCTAATCTCCAGGAGCTTGTGTA TAAGCAAGGGCAAGCTGGAATTACCAAGGCTACGGTTTCGGTTGTGTTTGATAACTCGGATAGGAACCGGAGCCCGCTCGGGTACGAAGACCACTCGGAG ATCACTGTGACTCGACAGATAGTAGTTGGTGGAAGGAACAAGTATTTGATAAACGGGAAGCTAGCACAACCGAGTCAAGTGCAGAACTTGTTCCATTCAG TGCAGTTGAACGTTAACAACCCGCATTTTCTGATTATGCAAGGCCGGATTACAAAGGTCTTGAACATGAAGCCTCCAGAGATTCTATCCATGCTCGAGGA GGCGGCTGGGACGAGGATGTACGAGACGAAGAAGGAGAATGCGTTGAAAACACTGGAGAAGAAGCAGAGCAAGGTAGACGAGATTAACAAGCTTCTTGAC CAGGAGATACTGCCTGCTCTCGAGAAGTTGAGGAGGGAAAGGATGCAGTATATGCAGTGGTCTAATGGCAATGCCGAATTGGACCGACTGAAGAGATTCT GTGTTGCTTATGACTATGTTCAAGCTGAGAGGATCAGAGACAGTGCGGTTGGCGAGGTTGATGGGATAAAAGCCAAAATGGTGGAGATTGATGGTAGTGC TGAAAAGATGCAGGGGGAAATAAAGGAAATGGAGAGTGAGGTGTCAAAGTTGACAGCTGAGAAGGAAGCCAGAATGGGTGGAGAAGTAACGGACTTGTCG AAGAAAGTTGATAATCTATCGGAGAACCTTGTTCGTGAAGTATCTGTGCTGAGTAACAAAGAGGATACTCTTAAGGGTGAAAATCAAAATGCTGAGAAGA TTGTCCACAACATTGAAGAGCTGAAGCAGTCCATAAAAGAGAGGGCCAACGCTGTTAAAAAATCTGAAGATGGTGCGGTTGATGTCAAGCGAAAGTTTGA GGAGCTTTCGAAGAGCTTAGACGAGTATGAGAAAGAATACCAAGGTGTGCTGGCTGGGAAGAGCAGTGGGAATGAAGAGAAATGCCTTGAAGATCAATTA AGTGAAGCTAAAGGCGCCGTTGGCAGTGCGGAAACAGAACTAAAGCAATTAAAAACAAAAATTAGCCATGGTGAGAAAGAGCTCAAAGAGAAGAGGAAGC TGTTGATGTCGAAGCGTGAAGAGGCAGTATCTGTGGAGAATGAGCTTAATGCTAGGAAAAAAGATGTTGAAAGTGTTAAGTCGGCGTTGGAATACCTTCC ATACGAAGAGGGCCAAATGGAAGCTCTCGAAAAGGATCGAGACTCGGAGATGGGGATAGTCAAGAAGCTGAAAGATGAAATTAGAAATCACTCGTCGCAG TTGTCAAATGTTCAGTTCAGTTACCGTGATCCTGCCAAAAACTTTGACCGGAACAAAGTAAAAGGGGTAGTGGCAAAACTTATTAAAGTGAAGGATAGAT CCACTATGACTGCCTTAGAGGTTACTGCTGGTGGGAAGTTGTTTAATGTGGTTGTGGACAGTGAGAATACTGGAAAGCAACTTCTTCAACATGGTGAACT TCGAAGACGAGTGACAATTATTCCTCTAAATAAAATTCAAGCCTATCGAGTAGCGCCCAGAGTTCAGCAGGCTGCTGCTAAGTTGGTTGGTAAAGAGAAT GCACAATTGGCACTTTCTCTAATTGGTTATGATGAAGAGGTTAAGAATGCCATGGAGTATGTGTTTGGATCAACCTTTGTCTGTAAAAGTACTGATGCTG CAAAGGAGGTTGCTTTCAATAAAGAAGTTCGGACTCCAAGTGTCACTCTTGAAGGTGACATATTTCAACCAAGTGGTCTTTTGACTGGTGGAAGCCGCAG GGGTGGTGGTGATCTATTAAGGCAACTTCATGAATTGGCAGAAGCTGAGTCAAAGCTTGAAGTGCATCAGAAAAATTTGTCTGAGATTGAACTTAAGATC AAGGAGCTCTTGCCTCTTTACAAGAAGTTTGTTGATCAAAGGAAACAGCTAGAACTGAAAATGTACGACCTGTCATTATTCCAGGGGAGAGCTGAACAAA ATGAGCATCACAAGCTTGGTGAACTGGTGAAGAAGATAGAACAAGATCTAGCTGAAGCCAAAGCTGCTGCAGAAGAAAAGCAAAGCTTGTATGATAAGTG CCTCAGTACTGTTTCCGAGCTCGAGAAGTCAATCAAGGAGCATGATAATAGTAGAGAAAAGCGGCTAAAGGATTTGGAGAAAAAGATTAAGACGACAAAG GCTAATATTCAGTCAGCTTCCAAGGATCTCAAGACACATGAACGTGAAAGAGAGAAGTTAGTTTTGGAAAGGGAAGCAGTTTTTAAAGAACATGCTTCTT TAGAGAGTCAATTGGAATCCTTGAAAGCCCAAATCGCTAGTCTTGGTGTTGAAGTAGAAGAACAAAAGACCAAGGTTGCTTCCATACGCATAAATTGCGA TGAAGCTCAAGCTGGGCTTGATGCTGTCCGCCTTAAGATGAAAGAGTGTGATACGCAAATTAGTAGCATTGTAAAGGAGCAGCAACAGCTTCAGCAGAAA ATTAGTGAGTTAAAGCTTGAGCGAAAGAAGTTGGAAAATGAGGTGAAAAGAATGGAAATGGAGCACAGGGATTGTTCTGTAAGAGTAGAGAAACTGCTTG AAAAGCACCCCTGGATTGCATCTGAGAAACAGTTGTTTGGAAGAAGTGGAACTGATTATGATTTCGCATCACGCGATCCTCACAGGGCAAGGGAAGAACT CGATAAATTACAAGCGGAGCAATCAGGTTTGGAGAAAAGGGTTAACAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAGGACGAGTTCAATGACTTGATG TCCAAGAAAAGTATCATCGAGACCGACAAATCCAAGATAAAGAAAGTGATCGAAGAGCTAGACGAGAAGAAGAAAGAAACGCTCAAAGTCACCTGGGTGA AAGTTAACAGCGACTTTGGATCGATCTTTTCCACGCTGTTACCTGGCACCATGGCGAAGCTAGAACCTACTGAAGGCAGTACCTTCCTGGACGGTCTCGA GGTTCGAGTAGCATTCGGTGGCATCTGGAAACAGTCCCTCTCAGAACTTAGCGGAGGCCAACGGTCTCTGATCGCTCTGTCTTTGATTCTGGCACTTCTG CTGTTCAAGCCGGCTCCTCTCTACATTCTAGATGAGGTTGATGCAGCTCTGGATCTAAGTCACACGCAGAATATTGGGAGAATGATCAAAGCTCACTTCC CGCACTCTCAGTTCATTGTGGTGTCTCTGAAAGAAGGCATGTTCAACAACGCCAACGTTCTATTCCGGACCAAATTCGTGGACGGTGTATCTGCTGTTAT GAGAACCGTGGCTTCCAAGCCAGGCAAATAG
AA sequence Show only first row Show all	>Lus10027215 pacid=23145364 polypeptide=Lus10027215 locus=Lus10027215.g ID=Lus10027215.BGIv1.0 annot-version=v1.0 MYIKEVCLEGFKSYATRTVVQGFDPFFNAITGLNGTGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRNRSPLGYEDHSE ITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKENALKTLEKKQSKVDEINKLLD QEILPALEKLRRERMQYMQWSNGNAELDRLKRFCVAYDYVQAERIRDSAVGEVDGIKAKMVEIDGSAEKMQGEIKEMESEVSKLTAEKEARMGGEVTDLS KKVDNLSENLVREVSVLSNKEDTLKGENQNAEKIVHNIEELKQSIKERANAVKKSEDGAVDVKRKFEELSKSLDEYEKEYQGVLAGKSSGNEEKCLEDQL SEAKGAVGSAETELKQLKTKISHGEKELKEKRKLLMSKREEAVSVENELNARKKDVESVKSALEYLPYEEGQMEALEKDRDSEMGIVKKLKDEIRNHSSQ LSNVQFSYRDPAKNFDRNKVKGVVAKLIKVKDRSTMTALEVTAGGKLFNVVVDSENTGKQLLQHGELRRRVTIIPLNKIQAYRVAPRVQQAAAKLVGKEN AQLALSLIGYDEEVKNAMEYVFGSTFVCKSTDAAKEVAFNKEVRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHELAEAESKLEVHQKNLSEIELKI KELLPLYKKFVDQRKQLELKMYDLSLFQGRAEQNEHHKLGELVKKIEQDLAEAKAAAEEKQSLYDKCLSTVSELEKSIKEHDNSREKRLKDLEKKIKTTK ANIQSASKDLKTHEREREKLVLEREAVFKEHASLESQLESLKAQIASLGVEVEEQKTKVASIRINCDEAQAGLDAVRLKMKECDTQISSIVKEQQQLQQK ISELKLERKKLENEVKRMEMEHRDCSVRVEKLLEKHPWIASEKQLFGRSGTDYDFASRDPHRAREELDKLQAEQSGLEKRVNKKVMAMFEKAEDEFNDLM SKKSIIETDKSKIKKVIEELDEKKKETLKVTWVKVNSDFGSIFSTLLPGTMAKLEPTEGSTFLDGLEVRVAFGGIWKQSLSELSGGQRSLIALSLILALL LFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSAVMRTVASKPGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	0	1
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	1.4	0.9712
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	1.4	0.9726
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	4.5	0.9553
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	4.5	0.9681
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	4.7	0.9448
					Lus10037590 [exp]	5.5	0.9704
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	5.7	0.9610
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	6.5	0.9665
AT1G16630			unknown protein		Lus10006845 [exp]	6.7	0.9666
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	7.9	0.9452

Compare expression of checked genes

Lus10027215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.