Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 486 / 2e-169 RNI-like superfamily protein (.1) AT5G51380 471 / 3e-163 RNI-like superfamily protein (.1) AT5G51370 449 / 1e-155 RNI-like superfamily protein (.1.2) AT5G23340 84 / 3e-17 RNI-like superfamily protein (.1) AT4G15475 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT2G25490 67 / 1e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 65 / 8e-11 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 63 / 2e-10 RNI-like superfamily protein (.1) AT1G77000 61 / 6e-10 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G47056 54 / 2e-07 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038927 [exp] 854 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10031741 [exp] 604 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 597 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10031165 [exp] 594 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 577 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10027218 [exp] 557 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10012764 [exp] 108 / 1e-24 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 90 / 4e-19 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 89 / 5e-19 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 551 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 547 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 473 / 1e-163 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 455 / 1e-156 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 86 / 2e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 84 / 8e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 81 / 3e-16 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 72 / 5e-13 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 70 / 1e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G238300 [exp] 67 / 8e-12 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027217 pacid=23145525 polypeptide=Lus10027217 locus=Lus10027217.g ID=Lus10027217.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCGAAGAAAAAGAATGAGAACGAGGTGCCGATAACCTGGCCGGAGCTCTGGCTCAAGGCCGCCGCTATGCAATCTCCGTCTCTTTCTGGAG GGAGCTCTTCGCCCAGCTGTAGCCTCTCCGAACCTGCAAGTCCGACATTTTCCGATACCAAATCCCTTATTGGAATCCCTTCAAAAGCTGTTGACTTTAC CCTGCTATTGAACGACGAAATCCTTCTAAAAATCCTATCTTTCCTGCCCGAATCACAGAGGAACTGCAACAGATTGGTCTGCAAGCGCTGGCTGAATCTC CAAGATCGACTATTTCGGTCGCTCAGGATTCTCGATTGGGGATTTCTCGAATCAGGTGTGTTGACTTCCAGGTTTCCTAATTTGACCGACGTAGATTTAG TCAATGCTTGTGTAGTTGTTACCCCAGTGGGTTCTAGTAGTGTTTGCCTGACCCATCGGCTTATATCTGCTAATATGAACTGTGAAATCTCTATGTTCTC GTTACCGGATTGGCGAGTTTGTGAGGAGTACTTGTTGCCAGTTGATGTTGTTGATAAAGGTCTCAAGGTTATAACCAATGGCTGCCCAAACTTGCGCCGG CTTGCTGTGATCGGTGCCAGTGAACAAGGACTGATAAGCCTCGCGGAAAAGTGTCTGACTTTGCAGGAATTGGAGCTCCATGGATGTAGTGACAGTGTCC TGCTAGGGGTTTCAGCTTGTACCAATCTGCAGATACTAAAAATTGTGGGGAACGTGTATGGACTTTATAATTCGTTGGTCTCGGATGTTGGTTTGACGAT TCTGGCTCAAGGTTGCAAGAGACTGGTGAAGCTCGAGCTTAATGGATGTGAAGGTAGTTACGATGGGGTCAAGGCAATAGGGCAGTGCTGCCAGATGCTT GAAGAGTTGACTGTTTGTGATCATAAGATGGATGATGGGTGGTTGGCTGCTCTTCAATTCTGCCAAAATCTGAAGAGCTTGAAGTTAATGTCGTGTAAGG GGATAGATGATGTCCCGGGGCCGGATGAGTATTTGGGGTTTTGCTCTACGCTTGAGAGCCTGCAGATGGAGAGATGTCAGTTGAGGGATGGGAATGGAGT GAGAGCTTTGTTTAAGGTGTGTGAAGCTGCAAGGGAAATCGTAATTCAAGATTGTTGGGGATTAAATGACGAAGTTTTCAGCTTGGCAAACATCTGCAGG AGGGTAAAAGAACTCAATTTGGAAGGATGTTCGGTACTGACAATAGAAGGGCTGGAGTCAGTACTTCTAACATGGAGTGAGCTTGAAAATCTGAAGATAG AGTCGTGTAAGAAAATAAATGATGGCGAGATATCTCCAGCGCTTTCGAACTTATTCTGTAGTCTGAAAGAGCTTAGATGGAGGCCGGGTTCCAAGTCGAT CCTTGGTGCAGATCTAACGGGGACCGGCATTGGAGAAAAGGGTAGCAAATTCTTCAGGAAGTCATGA
AA sequence Show only first row Show all	>Lus10027217 pacid=23145525 polypeptide=Lus10027217 locus=Lus10027217.g ID=Lus10027217.BGIv1.0 annot-version=v1.0 MSSPKKKNENEVPITWPELWLKAAAMQSPSLSGGSSSPSCSLSEPASPTFSDTKSLIGIPSKAVDFTLLLNDEILLKILSFLPESQRNCNRLVCKRWLNL QDRLFRSLRILDWGFLESGVLTSRFPNLTDVDLVNACVVVTPVGSSSVCLTHRLISANMNCEISMFSLPDWRVCEEYLLPVDVVDKGLKVITNGCPNLRR LAVIGASEQGLISLAEKCLTLQELELHGCSDSVLLGVSACTNLQILKIVGNVYGLYNSLVSDVGLTILAQGCKRLVKLELNGCEGSYDGVKAIGQCCQML EELTVCDHKMDDGWLAALQFCQNLKSLKLMSCKGIDDVPGPDEYLGFCSTLESLQMERCQLRDGNGVRALFKVCEAAREIVIQDCWGLNDEVFSLANICR RVKELNLEGCSVLTIEGLESVLLTWSELENLKIESCKKINDGEISPALSNLFCSLKELRWRPGSKSILGADLTGTGIGEKGSKFFRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	0	1
AT5G08010			unknown protein		Lus10040520 [exp]	2.2	0.8915
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	4.7	0.8765
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10015598 [exp]	5.5	0.8110
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	5.9	0.8524
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	9.0	0.8435
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	9.4	0.8681
					Lus10018814 [exp]	9.5	0.8308
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	10.0	0.8410
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	10.5	0.8680
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	11.0	0.8738

Compare expression of checked genes

Lus10027217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.