Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 489 / 5e-170 RNI-like superfamily protein (.1) AT5G51380 465 / 1e-160 RNI-like superfamily protein (.1) AT5G51370 429 / 6e-147 RNI-like superfamily protein (.1.2) AT4G15475 102 / 6e-23 F-box/RNI-like superfamily protein (.1) AT5G23340 75 / 2e-14 RNI-like superfamily protein (.1) AT5G25350 69 / 5e-12 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 58 / 9e-09 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G01720 57 / 2e-08 RNI-like superfamily protein (.1) AT3G07550 53 / 2e-07 RNI-like superfamily protein (.1.2) AT1G55590 53 / 3e-07 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038927 [exp] 905 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10031165 [exp] 658 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 636 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10031741 [exp] 590 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 589 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 558 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10012764 [exp] 94 / 1e-19 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 84 / 5e-17 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 83 / 1e-16 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 601 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 600 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 464 / 5e-160 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 460 / 5e-158 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 88 / 2e-18 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 77 / 1e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 76 / 2e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 72 / 4e-13 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 68 / 7e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G238300 [exp] 67 / 7e-12 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027218 pacid=23145389 polypeptide=Lus10027218 locus=Lus10027218.g ID=Lus10027218.BGIv1.0 annot-version=v1.0 ATGGGTACATTACACGATACTAAACCGGCGACAACTCCGACGAGCAAGAAGAAGAAGAAGACGACGATAAAGAAATACAGGGGATCCACCTGGTCTGACC TCTGGCACAAAACCTCCGTCGCCGCCAAGCCTCTGAAGCATGCCGTCTACGCTATGCAATTGCAGATCCCGTCTCTCTCCAGAGGCGCGACGATTTCCCC CAAAAAAGCTCCAACCGTAGACTTCTCATTCTCGAATCCGACGGCATCCCCGAAGGGCAAATTTGAACCGGCGATCTGCAATCTCTCCGAAAATGTCGAC CGCACACTTCTACTAAACGATGAGATAGTGTTGAAGATTCTGTCTTTGCTGCCTGGCTCACAGAGGAACTCTTACTCCAACTGCTTGGTATGCAAGCGGT GGCTGAATCTCCAAGGCCGTCTGGTTAAGTCTCTCAAGGTATTGGATTGGGATTTTATCGAATCGGGTAGGTTCATTTCCAGGTTTCCTAATTTAAACCA TGTGGATTTGATAAATGGATGTGTTGGTGTTGTTGATCGTTCGGATTCCAGTATTGCTTTGAGCCATAAGCTAATCTCTACGCATTTGGATTTCGGTGTG TTGCCTACAACTTGGCGAGTTTGTGAAGGGAACTTGTTGCCAGTTGAGATTGTTGATGGAGGGCTTAGAGTTTTAGCTAGTGGCTGTCCTAACTTGCGCC GGCTTGCAGTGATCGGCGCCAGTGAGTTGGGGATATTAACCGTGGCGGAAGAGTGTCCGACTTTACAGGAGCTCGAGTTGCATCGATGTAACGACAATAC GCTGCGAGGGATTGCAGCTTGTTCCAATTTGCAGATACTGAAGCTAGTGGGGAACGTGTACGGACTTTATAGTTCGTTGGTTACGGATGTCGGGTTAACG ATTCTGGCTCAAGGGTGCAAGAGATTGGTGAAGCTTGAGCTTAATGGATGTGAGGGTGGGTTCGATGGGGTTAAAGCGATCGGGCAGTGCTGTCAGATGC TCGAAGAGTTTACTATATGTGATCATGGGATGAACGCTGGGTGGTTGGGTGCTTTACCTTTCTGTGAAAATTTGAAGACTTTGAGGCTATTGTCGTGTAA GAGAATTGATACTGTGATAGAACCGGGCGAGGTTCTGGGTTGTTGTTTAGCGCTTGAAAGATTGCATTTGGAGAGGTGTTGGTTAAGGGACAAAAATGGC GTCGGAGCTCTGTTTAAGGTGTGTGGAAATGTGAGAGAGATTGCTGTGAGAAATTGCTGGGGGTTTGATGATGAAGTTTTCAGCTTGGCAAGTGCTTGCA GGAGGGTAAAGGTACTGAATCTAGAAGGATGCTCCTTGCTGACAACACAAGGCATCGAATCCGTGCTGCTTACATGGAACGAGCTTCAAACTCTGAAGAT AGAGTCCTGTAAGAACATAAAAGATGGCGAAATCTCTCCTGCACTTTCGACATTGTTCTCCGTGCTCAAAGACCTCAGATGGAGGCCCGATTCCAAATCT CGCCTTGTGGCAGGTCTCGTGGGGAGCGGCTCGGGGAAGAAAGGCCGCAAATTCTTCAGGAAATCACTAATCCAGTGA
AA sequence Show only first row Show all	>Lus10027218 pacid=23145389 polypeptide=Lus10027218 locus=Lus10027218.g ID=Lus10027218.BGIv1.0 annot-version=v1.0 MGTLHDTKPATTPTSKKKKKTTIKKYRGSTWSDLWHKTSVAAKPLKHAVYAMQLQIPSLSRGATISPKKAPTVDFSFSNPTASPKGKFEPAICNLSENVD RTLLLNDEIVLKILSLLPGSQRNSYSNCLVCKRWLNLQGRLVKSLKVLDWDFIESGRFISRFPNLNHVDLINGCVGVVDRSDSSIALSHKLISTHLDFGV LPTTWRVCEGNLLPVEIVDGGLRVLASGCPNLRRLAVIGASELGILTVAEECPTLQELELHRCNDNTLRGIAACSNLQILKLVGNVYGLYSSLVTDVGLT ILAQGCKRLVKLELNGCEGGFDGVKAIGQCCQMLEEFTICDHGMNAGWLGALPFCENLKTLRLLSCKRIDTVIEPGEVLGCCLALERLHLERCWLRDKNG VGALFKVCGNVREIAVRNCWGFDDEVFSLASACRRVKVLNLEGCSLLTTQGIESVLLTWNELQTLKIESCKNIKDGEISPALSTLFSVLKDLRWRPDSKS RLVAGLVGSGSGKKGRKFFRKSLIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	0	1
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	2.0	0.9706
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	2.8	0.9546
AT5G12360			unknown protein		Lus10038810 [exp]	3.2	0.9640
AT5G12360			unknown protein		Lus10039048 [exp]	5.5	0.9522
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	5.7	0.9557
AT5G01910			unknown protein		Lus10014179 [exp]	8.8	0.9467
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	11.8	0.9444
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	16.2	0.9425
AT2G42110			unknown protein		Lus10029282 [exp]	16.3	0.9189
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	19.0	0.9414

Compare expression of checked genes

Lus10027218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.