Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07660 987 / 0 SMC6A structural maintenance of chromosomes 6A (.1) AT5G61460 984 / 0 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G15920 77 / 7e-14 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT3G47460 47 / 0.0001 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 47 / 0.0001 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G54670 44 / 0.0006 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038928 [exp] 113 / 1e-29 AT5G61460 66 / 3e-14 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038927 [exp] 85 / 2e-16 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10029476 [exp] 70 / 1e-11 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10039590 [exp] 67 / 6e-11 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10027215 [exp] 45 / 0.0005 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10021268 [exp] 44 / 0.0006 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107700 [exp] 1114 / 0 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G262600 [exp] 73 / 9e-13 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.003G108400 [exp] 46 / 0.0002 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G125000 [exp] 45 / 0.0003 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027219 pacid=23145494 polypeptide=Lus10027219 locus=Lus10027219.g ID=Lus10027219.BGIv1.0 annot-version=v1.0 ATGGGGGACACTGGTTTCGTCCCTGGATTTTCGGGTGCTTCCCCACGAACATCGGGTACCATCAAGAGGATCCGAGTCGAGAATTTCATGTGCCACAGTA ACCTCCAAATCGAGCTCGGTCCTCGGGTTAACTTCATCACCGGCCAGAACGGAAGTGGAAAGTGTGCAATACTTACGGCTATATGTGTTGCGTTCGGGAG TAGAGCTAAGGGGACTCAGAGGGCGTCCACGTTGAAGGATTTCATCAAAACTGGTTGCAGTTCTGCGGTTATTGAAGTGGAAATAAACAACGAAGGAGAT GATTCCTTTAAGCATGATCTGTATGGCGATTCCATAATTTTGGAACGTCGAGTCAATCCGTCTGGCAGCTCACTTAGTCTGAAGGATTACCGAGGAAGAA AAGTTGCACTCCGGAAAGAGGATCTTCGGGAGCTGATAGATCATTTCAATATTGATGTTGAAAATCCATGTGTAGTGATGAGCCAAGACAAAAGTAGGGA ATTCCTGCATTCTGGGAACAACAAAGACAAATTTAAGGCTACCCTTCTTCAGCAAGTTAATGATCTCTTACAAAGCAACACGGAAGAACTGAGGTCGGCA ACTGCACTTGTTGAAGAATTAGAGGGTTATATTAAACCCATAGAGAAAGAACTGGAGGAGTTGGAGCAAAAAATTAAGAACATGAAGGACTTGGAAGAAA TGACCCAGCAGGTACAGATTTTGCACAAGAAGCTAGCATGGGCATGGGTTTATGATGTAGACAAGAGAATGCAGGAGCACTTTGCAAAGCTGGAGAAACT TAAACAGCGAGTATCTACTTGCCAAGAGAAGATAGATCAAGAATTAGCTAAGATGGAACTTTTGGGAGAAAGATATGCAAAGAAGAAAGCTCAAGTTGCT TGCCTGGAGGAGAAACAAATGGAAGTGAATAGTAGGCGGGAGGAGCTACAGCAGTCTAAGTCAGCGGCTACAACGGAGAAGTTTGAGTTAGAAGTTAAGC ATAAACGCGCAACTGAGCAGATTTCTGAATGGAAGAAAAAAGTAAAAGCCATTGAGCAGCAGATTGAGGAAATTAATGAGCAGCACCTTAGAAGCACCCA GACTGAAAGATCTGAAATGGATGCAAAGGTCAGGGAACTACTATACGAAATAGATGTTGCCAATGAATCACTCTCAAGGTTAAAGGAAGAGGAACTTGGC TTTGCTGAAGAAAAGGAGAAATTAAGAAATGAAATTGGAGATATTGCTAAAGAGATCGCTTATAATGAGGGTAAGGGAGAAGAATGTCGTTCAAACATTA GAGAGCTTCGAGAGAACATGAAAAACAAGGTCACAGCATTTGGAGGACGCAGAGTCCTTCAACTTCTCCGTGCAATTGAAAATCATCGCAATGAATTCAA CAGGCCACCAATAGGTCCAATTGGCGCTAATCTGACTTTAGCAAACGGTGATAAATGGGCTCTAGCTGTTGAGAATGCTATTTCCAAGCTGCTCAATGCG TTCATTGTGACGAATCATAACGATTCTCAAGTTCTAAAAAGATGTGCTAAGGAAGCAAGTTATGGCGACTTGAAAATTTTCGTATATGAATTCTCCCGAC CAAGGTTGTCCATTCCTCCTGACGCACTTCCCAGAACGGATCACCCTACTATTCTAGCTATTATACGTTCCACCAATGATACGGTACTGAATGTGCTGAT AGATATGTTCTTTGCTAGGTTCTGTCGTGGGTCAGTCCAGACAGTGCTTCCTCCAAATAAGCACCTTCGAACTAGCCGTTTGTGTGGTTCATTTGATAAT CAAATAGGTGAACTTCAGCAACAAATCAAGGATTTTGCGAAAGAAGCAGAGAGTTTGAGGAAGAGGAAACGTGAGTCTGAGAACAACCTTCGTAGTGTTG AAGAAAGATTGCAGTCTGCTAAGGGAAAGTACTCCAATGCTGCGAAGGACATGTCAAAAAGGAAACTAGAGCTGCAGGATATGAAGAGATCAATCAACAC TGAAAGCATGTTGCCATCAGCATCAACTTTAGATGAGCTTCATGAAGAAATTTCTAGGATACAAGAAACTATAAGGGAGAAGGAAGCTATGCTAGAAGGG CTTCAGGAAGAAATTAAAAAGGCTGAAGCAAAAGCTGAGGATCTGAAGATGTCTTTTCAGAGTCTATTTGATTCTGCAAAAGAAGACGTTAAGACCATGA AGGAAGCTGATACTGAGCTAATGAAGATAGAAGCAGATCTGAAGGAGGCAGAGTTGCAAAAAGAACATTATGAACGTATAATGGCTAATAAGGTCCTGGC TAACATAAAAGAGGCGGAGGAAACACATGTGAAGCTTGAAAAAGAACGAAAGGAGGCATCCATGAAGGCTTCCATCATATGTCCAGAGAGCGAACTTGAA GATTTTGGAGGACTTGATGACGCCAGTCCAGAGCAACTTAGTGCCCATTATAGTAGACTGAAGAAGAGACTCGAGAAAGAAAGTGAGCGGCATCCAGAAT CTATTGATGATCTGATAATGTTGCATGAGAAAAAAGAACGTAAAATTCGCAGGAAAAGACAAATGTATAAATCGTTTAGAGAAAAATTGGAGGCCTGTGA GAAAGCCTTAAACTCGAGATGGTCAAAGTTTGGTAGCACCAGAAACCATGCAAAGAGTGTGCTAACTTGGAATTTCAATGGTCATTTGGGAAAGAAAGGA ATTAGTGGGAACATCAAAATTGACTACGAGGGAAAAACTCTTGCAGTGGAGGTGAAAATGCCCCAAGATGCATCAAATAGCTCGGTTCGCGACACAAGAG GGCTTTCAGGCGGTGAACGATCATTCTCTACTCTATGCTTTACACTGTCTCTTCATGCGATGATAGAGTCTCCATTTCGAGCGATGGACGAGTTCGATGT ATTCATGGATGCGGTGAGTCGGAAAATCAGCATGGACACGTTGGTGGACTTTGCTCTAGGCCAGGGTTGCCAGTGGATATTTATCACTCCTCACGATATC AGCATGGTGGAGCAAAACGAGCACATAAAGAAGCAGCAAATGGCAGCTCCTCGATCTTAA
AA sequence Show only first row Show all	>Lus10027219 pacid=23145494 polypeptide=Lus10027219 locus=Lus10027219.g ID=Lus10027219.BGIv1.0 annot-version=v1.0 MGDTGFVPGFSGASPRTSGTIKRIRVENFMCHSNLQIELGPRVNFITGQNGSGKCAILTAICVAFGSRAKGTQRASTLKDFIKTGCSSAVIEVEINNEGD DSFKHDLYGDSIILERRVNPSGSSLSLKDYRGRKVALRKEDLRELIDHFNIDVENPCVVMSQDKSREFLHSGNNKDKFKATLLQQVNDLLQSNTEELRSA TALVEELEGYIKPIEKELEELEQKIKNMKDLEEMTQQVQILHKKLAWAWVYDVDKRMQEHFAKLEKLKQRVSTCQEKIDQELAKMELLGERYAKKKAQVA CLEEKQMEVNSRREELQQSKSAATTEKFELEVKHKRATEQISEWKKKVKAIEQQIEEINEQHLRSTQTERSEMDAKVRELLYEIDVANESLSRLKEEELG FAEEKEKLRNEIGDIAKEIAYNEGKGEECRSNIRELRENMKNKVTAFGGRRVLQLLRAIENHRNEFNRPPIGPIGANLTLANGDKWALAVENAISKLLNA FIVTNHNDSQVLKRCAKEASYGDLKIFVYEFSRPRLSIPPDALPRTDHPTILAIIRSTNDTVLNVLIDMFFARFCRGSVQTVLPPNKHLRTSRLCGSFDN QIGELQQQIKDFAKEAESLRKRKRESENNLRSVEERLQSAKGKYSNAAKDMSKRKLELQDMKRSINTESMLPSASTLDELHEEISRIQETIREKEAMLEG LQEEIKKAEAKAEDLKMSFQSLFDSAKEDVKTMKEADTELMKIEADLKEAELQKEHYERIMANKVLANIKEAEETHVKLEKERKEASMKASIICPESELE DFGGLDDASPEQLSAHYSRLKKRLEKESERHPESIDDLIMLHEKKERKIRRKRQMYKSFREKLEACEKALNSRWSKFGSTRNHAKSVLTWNFNGHLGKKG ISGNIKIDYEGKTLAVEVKMPQDASNSSVRDTRGLSGGERSFSTLCFTLSLHAMIESPFRAMDEFDVFMDAVSRKISMDTLVDFALGQGCQWIFITPHDI SMVEQNEHIKKQQMAAPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	0	1
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	1.0	0.9160
					Lus10028270 [exp]	1.4	0.9071
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	3.5	0.8945
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	3.5	0.8920
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	3.6	0.8522
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	3.7	0.8783
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	4.5	0.8835
AT3G27390			unknown protein		Lus10014881 [exp]	4.7	0.8429
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	4.9	0.8542
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	5.5	0.8388

Compare expression of checked genes

Lus10027219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.