Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28200 74 / 3e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02030 73 / 6e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 69 / 2e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G49930 67 / 4e-13 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G67450 65 / 2e-12 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT4G35280 65 / 4e-12 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G45120 65 / 6e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 64 / 6e-12 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT2G17180 63 / 2e-11 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G61470 62 / 3e-11 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038929 [exp] 293 / 7e-100 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1) Lus10021409 [exp] 84 / 1e-18 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 75 / 6e-16 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10015740 [exp] 66 / 3e-12 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10040425 [exp] 62 / 1e-11 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10021637 [exp] 63 / 5e-11 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10023540 [exp] 62 / 5e-11 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10033798 [exp] 61 / 8e-11 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10003463 [exp] 61 / 1e-10 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125900 [exp] 76 / 1e-15 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.001G295500 [exp] 69 / 1e-13 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.010G229400 [exp] 68 / 4e-13 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 67 / 1e-12 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 67 / 2e-12 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.014G017300 [exp] 63 / 1e-11 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 64 / 2e-11 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.008G032300 [exp] 63 / 2e-11 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.009G089400 [exp] 62 / 2e-11 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G066100 [exp] 63 / 3e-11 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027220 pacid=23145538 polypeptide=Lus10027220 locus=Lus10027220.g ID=Lus10027220.BGIv1.0 annot-version=v1.0 ATGAACAACAACCAGCCGAGATCGTGCAAGATCTGCAACCGGTGGTTCCCAACTGGCAAATCCATGGGCGGCCACATGAGATCTCACTTGGCCAAACTCC CTCTCCCTCCCAAACCCTATATCCCACCTCCTCCGCCGCCGCAGCAGCAGCCAGCTGGAGGACTACTACTTACCTCGCCAGATCCGCCTGCGCCAGCGCC CTCATCGTCCCCCAGCTCCACCCTCGTCAACTCCACCGAGGATGAAGATTCTTCCTTTCCCGTGATGACTCGGACCAGATCGGTCCGAAGGAAACGCACC CTGCCTCCACCACCGCCCCCACCCAAACAGATTACTAGCTCAGGTGAGGAAGAGGCGGAGGTAGCCATGTGTCTCTTGATGATGTCCTTCGGCCGCGGAG GAGGCGGAGGTAAGTTGTATAGATGTGAGAAGTGCAATAGAGGGTTCGGATCTTACCAGGCACTAGGAGGCCACCGTGCAAGCCACAACAAGGCCGGTAG GCGGCTGGTGATGATGGACTACGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGAATACTATCATCATATCATTGATGAGGAAGAC GGCAGAGTAGGAAGCAACAGTCGGAGGATGTTCAAGTGCTCAATTTGCGACAAGGAGTTTGAATCCGGTCAGGCATTGGGAGGGCACAAGAAGGTACATT TTGCTGAGATGAACAAGATGAAGAAGAAGCGCAGGTTGATTCTGTCTATAGATCTGAATTCACCCGTTCCTGATGATGATGATGCTTATCGGCTTTCGAG GTGA
AA sequence Show only first row Show all	>Lus10027220 pacid=23145538 polypeptide=Lus10027220 locus=Lus10027220.g ID=Lus10027220.BGIv1.0 annot-version=v1.0 MNNNQPRSCKICNRWFPTGKSMGGHMRSHLAKLPLPPKPYIPPPPPPQQQPAGGLLLTSPDPPAPAPSSSPSSTLVNSTEDEDSSFPVMTRTRSVRRKRT LPPPPPPPKQITSSGEEEAEVAMCLLMMSFGRGGGGGKLYRCEKCNRGFGSYQALGGHRASHNKAGRRLVMMDYDDEEEEEEEEEEDDDEYYHHIIDEED GRVGSNSRRMFKCSICDKEFESGQALGGHKKVHFAEMNKMKKKRRLILSIDLNSPVPDDDDAYRLSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027220 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	1.4	0.9794
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	4.2	0.9754
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	8.3	0.9751
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10039383 [exp]	9.5	0.9716
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	12.5	0.9707
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	13.1	0.9743
AT4G37290			unknown protein		Lus10019310 [exp]	21.6	0.9733
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	23.6	0.9730
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	29.5	0.9688
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	30.3	0.9716

Compare expression of checked genes

Lus10027220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.