Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61480 1249 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 768 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 726 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 680 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 676 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 658 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 658 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 615 / 0 HSL1 HAESA-like 1 (.1) AT5G48940 577 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 575 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038930 [exp] 1801 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 755 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 754 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 749 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019248 [exp] 675 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 674 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 674 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 670 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019067 [exp] 654 / 0 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107600 [exp] 1390 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 1387 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 814 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 795 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 780 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 709 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 704 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 697 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 689 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 675 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027221 pacid=23145426 polypeptide=Lus10027221 locus=Lus10027221.g ID=Lus10027221.BGIv1.0 annot-version=v1.0 ATGAATCTTCATCTTCTTCGCCTTTTCTCTTCACTTCTTCTTCTTCTCTTCCTCCCAACTTCCCCTGCCTCCTCCGCCTCCACCGCGGCAGCTCTGCCTC CTGATCTCCGAGCACTCATTTCCCTCAAATCCTACCTCCAATCTCACCACACCTTCCATGGTTGGGAAGTCGAGTCCATGGACACCAAACTGGGTCGTGG AGACCCGGTTTGGTGTTCGTGGACCGGTGTCCAATGCAGGGGAGGACAAGTCACGAATCTCGATCTCTCTCGTCGGAACCTCTCCGGTTCGATCCCAACC GACATCAACCTCTTGACCAGCTTGCTCCATCTCAACTTAAGTGGAAACTCCTTCGACGGAATTTTCCCATCCACCATTTTCAACCTCCCCAACCTAAGAA TCCTCGACATCAGCCATAACAACTTCAATTCGACATTCCCACCCGGAATTTCGAAATTGAAATTCTTGAGAGTGTTCAATGCTTATAGCAATAACTTCAC AGGTGCTCTGCCTAAAGAGTTCATGTTCCTCCGGTTCTTGGAGCAGCTCAATTTGGGAGGGAGCTATTTCGAAGGCGAGATTCCGATCGGGTATGGTTCT TTCCCACGGCTGAAATTTCTTCACCTCGGCGGTAACTCTTTCGACGGTCCCTTGCCGCCGCAGTTGGGGTTCTTGACTCAGCTTGAACGGATGGAGATCG GGTACAATTCATGGTCCGGTAAAGTTCCGGTGGAATTCTCTCTGTTGAGTAATCTTAACTATCTCGATATCTCCACTTGCTTCCTCTCCGGTAATCTCAC TCGCGAGCTTGGAAATCTCACTCAGTTGGAATCACTGCTTCTATTCAAGAACCAGTTTACAGGGGAAATCCCTGAGAGCTTTTGCGAATTAAAGTCTCTA AGGGTGCTTGATTTGTCGGAGAATAAACTCACCGGAGTAATACCGGAAGGAATTTCAAAGTTGAAAGAGCTCACAAGGTTGAGTCTGATGAACAACGAGC TCACCGGAGAGATTCCGCAAGGTATAGGAGAGTTACCGAATCTCGACACGTTATCCGTCTGGAACAATTCATTAACCGGGACTCTGCCTGGAAATCTCGG TTCCAACAGTAAGCTAGAATGGCTAGACGTGTCGTCGAATTTATTGACAGGGGAAATTCCGGCGAGTCTCTGTAATGGAAACAAGTTGTACAAGCTTATT CTTTTCTCCAATGGCTTCTCCGGTGAGCTCCCCGATACGTTAGCGAACTGCAGCTCGCTGTCGAGGTTCAGAATCCAGAATAACCAGCTGAACGGTTCGA TCCCTTTAGGGTTCGGTTCGCTTTCGAATTTGACGTTTGTCGATCTAAGTCAGAACAATTTCAGCGGCGAGATTCCGGCGGATTTTGGAAATGCTCCGGT TTTGCAGTATTTCAACATATCGGAGAATAGATTTGAGTCCGGATTGCCAAACAACATATGGAGTGCTCCGAATCTGCAGATCTTCTCGGCGAGTAAGAGT CGAATCGTCGGGAAGATTCCGGAATTCGTCGGATGTAGTAATGTGTACAAGATCGAGCTTCAGGGGAATTTGCTCAACGGGACGATTCCTTGGGACATCG GCCACTGTGAGAAGCTGCTCTGTTTGAATCTGAGCCATAATTCGTTGACTGGAATCATTCCTTGGGAGATCTCTGCTCTTCCTTCGATAACGGATGTTGA CTTATCTCGAAACTTCCTCACCGGCTCGATCCCGTCGAATTTCGGCAATTGCAGCACGATCGAGACCTTCAACGTCTCTTACAATCTCCTCACCGGTCCG ATCCCATCCTCCGGGACGATTTTCCCCAATCTCCACCCTTCGTCGTTTCTAGGAAACGACGGCTTATGCGGCGGAGGAGCATCCAAGCCGTGCGCATCCC CTGCCGCCAATGCGATGGAAGTAAACGACCGGAATAAGAGAACAACGGCGACGGCAGGAGCGATCGTGTGGGTGACGGCGGCAACGTTCGGGATCTGCCT GTTCGTGCTGGTAGCAACGACACGGTGCATGATTCAAAACCGACGGAGAAAACACGAAGACAGCCGTCGTGAGATCGGGCCGTGGAAGCTGACGGCGTTC CAACGGTTGAATTTCACGGCGGAGGACGTTTTGGAATGTTTGGAGACGAGCAATAACAAGATAATCGGGATGGGATCTGCGGGGACGGTTTACAAAGCCG AAATGCCTGGTGGCGAGGTGATCGCGGTGAAGAAGCTCTGGTCCGGAAACAAAGAAACAAGTACTACTACAATGATCGGCGGTGGTTGCGGGATCGGAGG AGGACGGCGGAAGGGAGGCGGGGCGGTGGTGGCGGAGGTTGAGGTGTTGGGAAACGTGAGGCACCGAAATATCGTGAGGTTGTTAGGATGTTGTAGCAAC AGAGAATGCACGATGTTGTTGTACGAGTACATGCCGAACGGGAGCTTGGACGATCTGCTTCACGGGAAGAGGAAAGAGACCGCGGAAGGCGCGGATTGGG TCGAGCGGCACCGGATAGCTATTGGTGTCGCTCAGGGGATCTGCTATCTCCACCACGACTGTGATCCGGTGATCGTACATCGGGATCTTAAACCGAGTAA CATACTCTTGGATGGTGAGATGGAGGCTAGGGTGGCCGACTTCGGCGTCGCGAAGTTAATCCAGAGCGACGCCGAGTCCATGTCCGTTATCGCCGGCTCC TATGGCTATATTGCTCCAGAATACGCCTACACGCTCCAAGTCGACGAGAAATCCGACATATACAGCTACGGGGTGGTACTAATGGAAATCCTTTCGGGCA AAAGATCGGTGGGGTCCGAATTCGGAGAAGGGAACAGCATCGTCGACTGGGTCCGGTCCAAAATCAAGACCAAAGAAGGGTTCAACGACGTCCTCGACAA TAACGCCGGTGCCGGGATCCCGTCGGTAAGGGAGGAGATGATGCAGATGCTCAAGATAGCTCTATTGTGCACCAGCCGCAACCCGGCCGACCGGCCCTCG ATGAGGGACGTCGTGATCATGCTGCAGGCGGCAGCGCCGAAGCGGAAGTTGGTGGTCGTTAGTGACGCCGGCGGCGAGAGTAGGGTGGTGGAGGGTGAGG GTGGGGTTGTAGTACAGAAGTGA
AA sequence Show only first row Show all	>Lus10027221 pacid=23145426 polypeptide=Lus10027221 locus=Lus10027221.g ID=Lus10027221.BGIv1.0 annot-version=v1.0 MNLHLLRLFSSLLLLLFLPTSPASSASTAAALPPDLRALISLKSYLQSHHTFHGWEVESMDTKLGRGDPVWCSWTGVQCRGGQVTNLDLSRRNLSGSIPT DINLLTSLLHLNLSGNSFDGIFPSTIFNLPNLRILDISHNNFNSTFPPGISKLKFLRVFNAYSNNFTGALPKEFMFLRFLEQLNLGGSYFEGEIPIGYGS FPRLKFLHLGGNSFDGPLPPQLGFLTQLERMEIGYNSWSGKVPVEFSLLSNLNYLDISTCFLSGNLTRELGNLTQLESLLLFKNQFTGEIPESFCELKSL RVLDLSENKLTGVIPEGISKLKELTRLSLMNNELTGEIPQGIGELPNLDTLSVWNNSLTGTLPGNLGSNSKLEWLDVSSNLLTGEIPASLCNGNKLYKLI LFSNGFSGELPDTLANCSSLSRFRIQNNQLNGSIPLGFGSLSNLTFVDLSQNNFSGEIPADFGNAPVLQYFNISENRFESGLPNNIWSAPNLQIFSASKS RIVGKIPEFVGCSNVYKIELQGNLLNGTIPWDIGHCEKLLCLNLSHNSLTGIIPWEISALPSITDVDLSRNFLTGSIPSNFGNCSTIETFNVSYNLLTGP IPSSGTIFPNLHPSSFLGNDGLCGGGASKPCASPAANAMEVNDRNKRTTATAGAIVWVTAATFGICLFVLVATTRCMIQNRRRKHEDSRREIGPWKLTAF QRLNFTAEDVLECLETSNNKIIGMGSAGTVYKAEMPGGEVIAVKKLWSGNKETSTTTMIGGGCGIGGGRRKGGGAVVAEVEVLGNVRHRNIVRLLGCCSN RECTMLLYEYMPNGSLDDLLHGKRKETAEGADWVERHRIAIGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQSDAESMSVIAGS YGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVGSEFGEGNSIVDWVRSKIKTKEGFNDVLDNNAGAGIPSVREEMMQMLKIALLCTSRNPADRPS MRDVVIMLQAAAPKRKLVVVSDAGGESRVVEGEGGVVVQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	0	1
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	1.4	0.9786
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	4.0	0.9765
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	5.5	0.9642
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	5.5	0.9730
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	5.7	0.9684
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	6.9	0.9716
					Lus10043486 [exp]	8.9	0.9699
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	11.1	0.9553
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	11.2	0.9713
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	12.0	0.9610

Compare expression of checked genes

Lus10027221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.