Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07630 557 / 0 lipid transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038931 [exp] 296 / 1e-98 AT5G07630 302 / 7e-99 lipid transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126200 [exp] 631 / 0 AT5G07630 757 / 0.0 lipid transporters (.1) Potri.003G107501 [exp] 107 / 2e-28 AT5G07630 91 / 3e-23 lipid transporters (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF04506 [flax] [poplar] Rft-1 Rft protein
Representative CDS sequence Show only first row Show all	>Lus10027222 pacid=23145417 polypeptide=Lus10027222 locus=Lus10027222.g ID=Lus10027222.BGIv1.0 annot-version=v1.0 ATGAAAGCCACGTTGCCGGATGTTCGGCCCAAGGCTTATCCGGATCCATTTGGCCATTTTTCTAGACGTCTTTTCTGGTGGGCTACACAGTTGTTGTCCA GAGGAATCCCGTTCATCTTCAATTCATGGCTCGTCAGATACCTCACCGCCGAAGACTACGCGGTCTACGCAGTACAGTTTCAACTCTTCGTCACCTGCGT TTTGTTCCTCAGCCGCGAAGGATTCCGGCGAGCTTGTATGAGAGCAGACATCAAAGATGGTGAAACTTCAGCAGAGGATTATGCAGCAAAGATACTGAAA GTAGCTTGGATGAGTCTCCCACTTGGAATACTGATCACAGCTGCAGCTGTTGCTTTTGTGTTTTGGTGGCAAGGGCTAAACAATGCTGACTCCTATGCAC AGGCCATATTGATCAATGGCTGTGCGTGTATGTTGGAGCTCTTGGCCGAGCCCTTGTATATCCTGTCTCAGAACATGCTGCTGCTCGAGCTGCGGTTGGT GGTTGAATCTGCTGCCACGCTCTTCCGATGCCTGACGATGCTTGGAGCAGCGAGGGATTATGATAAGCAGCTCTCAAATATGTGTATGCTGTTTACTTTC CAATCCTTTCGGAAGCTAATACTTCAAGAAGGCGAAAAGCTTGTCCTAGTGTGGCTCGATACCCCGTATAATCAAGCTGTTTATGGACTTGTTGACAAAT TAGGGAGCTTGGTCGTGAGAATGGTGTTTCTTCCTTTTGAAGAAAGCTCATATGCTACATTTGCCAGGTCTGCATCAGGACAGTATCCAAATAAAGCAGG AAGGTTGGGAGCATCTCTTACTGAGGGACTGAAGCTTGTTCTGTTAATCGGACTTGTGTTTATGGCATTCGGTCCTAGTTACTCGTACTCTCTCATTCGG TTGCTGTACGGGCAGAAATGGAGCGATGGAGAAGCATCGGTAGCCCTCCAATACTATTGCCTGTATGTGATCGTTTTAGCAATGAATGGAACTTCGGAAG CATTTCTACATGCTGTTGCCACTGAGAACCAGATCAAACGCTCGAACGACTCGTTGCTTCTGTTCTCCATTATCTACGTGGTGCTCAACGTCTTACTTAT TCGATCAGCTGGAGCGGATTCCTCCGCTTTTTCGTTCTTGAACTGTATGCCGTCGGGATGGCCAGTACTATTGATTTCAGGGATAGTTACTCTCGTTTCA GAGAGAGTCTTCCTTGATCGTGACGAGTTCTGGTCGACATTCTCGATTCACTTCTCTGTCGGGGTAGCTTGCTTCTGCGTATCTTCAGTCGTCATGTGA
AA sequence Show only first row Show all	>Lus10027222 pacid=23145417 polypeptide=Lus10027222 locus=Lus10027222.g ID=Lus10027222.BGIv1.0 annot-version=v1.0 MKATLPDVRPKAYPDPFGHFSRRLFWWATQLLSRGIPFIFNSWLVRYLTAEDYAVYAVQFQLFVTCVLFLSREGFRRACMRADIKDGETSAEDYAAKILK VAWMSLPLGILITAAAVAFVFWWQGLNNADSYAQAILINGCACMLELLAEPLYILSQNMLLLELRLVVESAATLFRCLTMLGAARDYDKQLSNMCMLFTF QSFRKLILQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPNKAGRLGASLTEGLKLVLLIGLVFMAFGPSYSYSLIR LLYGQKWSDGEASVALQYYCLYVIVLAMNGTSEAFLHAVATENQIKRSNDSLLLFSIIYVVLNVLLIRSAGADSSAFSFLNCMPSGWPVLLISGIVTLVS ERVFLDRDEFWSTFSIHFSVGVACFCVSSVVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	0	1
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	4.5	0.6565
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002242 [exp]	10.5	0.5931
					Lus10009807 [exp]	11.9	0.6393
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	12.0	0.6141
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	12.2	0.6570
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	18.3	0.5384
AT5G62650			Tic22-like family protein (.1)		Lus10010502 [exp]	21.2	0.5951
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	27.3	0.5856
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	28.9	0.6071
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	33.4	0.5700

Compare expression of checked genes

Lus10027222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.