Plant FIBer expression Database

Lus10027223 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65680 100 / 8e-26 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1)
AT2G45110 87 / 2e-21 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1)
AT3G60570 85 / 2e-20 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
AT1G65681 81 / 5e-19 EXPB6 beta expansin 6 (.1)
AT4G28250 71 / 5e-15 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2)
AT2G20750 62 / 6e-12 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1)
AT5G39260 51 / 4e-08 ATHEXPALPHA1.20, ATEXP21, ATEXPA21 EXPANSIN 21, expansin A21 (.1)
AT5G56320 49 / 4e-07 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
AT5G39280 47 / 1e-06 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1)
AT4G38400 46 / 4e-06 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038933
[exp]
184 / 1e-58 AT1G65680 301 / 1e-102 expansin B2 (.1)
Lus10036066
[exp]
106 / 1e-28 AT1G65680 286 / 1e-97 expansin B2 (.1)
Lus10039816
[exp]
75 / 1e-16 AT4G28250 402 / 3e-143 expansin B3 (.1.2)
Lus10018583
[exp]
75 / 2e-16 AT4G28250 398 / 1e-141 expansin B3 (.1.2)
Lus10031638
[exp]
74 / 1e-15 AT2G20770 238 / 3e-76 GCR2-like 2 (.1)
Lus10033700
[exp]
71 / 8e-15 AT1G65680 233 / 2e-75 expansin B2 (.1)
Lus10030931
[exp]
49 / 3e-07 AT4G17030 183 / 2e-57 expansin-like B1 (.1)
Lus10011012
[exp]
49 / 4e-07 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
Lus10012747
[exp]
48 / 5e-07 AT5G39280 317 / 1e-109 EXPANSIN 23, expansin A23 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G066300
[exp]
96 / 3e-24 AT1G65680 322 / 2e-111 expansin B2 (.1)
Potri.019G101900
[exp]
75 / 1e-16 AT4G28250 367 / 1e-129 expansin B3 (.1.2)
Potri.013G134300
[exp]
75 / 2e-16 AT4G28250 402 / 2e-143 expansin B3 (.1.2)
Potri.001G112900
[exp]
56 / 1e-09 AT1G12560 364 / 5e-128 expansin A7 (.1)
Potri.008G088300
[exp]
49 / 2e-07 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Potri.017G085300
[exp]
49 / 3e-07 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2)
Potri.003G087000
[exp]
49 / 3e-07 AT4G17030 183 / 3e-57 expansin-like B1 (.1)
Potri.004G123200
[exp]
48 / 7e-07 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Potri.001G001100
[exp]
48 / 8e-07 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Potri.010G167200
[exp]
48 / 8e-07 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0199 DPBB PF03330 DPBB_1 Lytic transglycolase
Representative CDS sequence
>Lus10027223 pacid=23145540 polypeptide=Lus10027223 locus=Lus10027223.g ID=Lus10027223.BGIv1.0 annot-version=v1.0
ATGGCGACCATGAACTCTCTTCCTTCATCAACGACATTTCCCCTAGTGTTTGCTTACTCCATCGTCTTATACTTGTCCATGGTTCATCTCTCTTCTTCCT
CCCGATCCATCAGCGAAGTAATGTTTCGCCATTTCAACCGACCGAACGCTGCCGCCGAGCTCGGTCAGAGCCAGTGGTCACGCGCCGGTGCAACTTGGTA
CGGCGGCCCCGACGGCGACGGCAGCGACGGTGGATCTTGTGGATATAGTACGGCGGTATCACAGTCTCCATTCTCCTCCATGGTCACGGCGGTCGGCCCA
TCTCTTTACAACTCCGGCAAGGAATGTGGAGCTTGTTATCAAGTTAAATGCACAAACAATCCATCTTGTTTGGACAAACCGGTTCGAGTGGTTATAACCG
ACTCTTGTCCTGGTGGTTCATGTGCATCAGACTCTGCACATTTCGAATCTAAGCGGGACCACGTTTGGTGCCATGACGCTCCCCGGCCACGAAAGCAAGT
TTCGTGA
AA sequence
>Lus10027223 pacid=23145540 polypeptide=Lus10027223 locus=Lus10027223.g ID=Lus10027223.BGIv1.0 annot-version=v1.0
MATMNSLPSSTTFPLVFAYSIVLYLSMVHLSSSSRSISEVMFRHFNRPNAAAELGQSQWSRAGATWYGGPDGDGSDGGSCGYSTAVSQSPFSSMVTAVGP
SLYNSGKECGACYQVKCTNNPSCLDKPVRVVITDSCPGGSCASDSAHFESKRDHVWCHDAPRPRKQVS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65680 ATHEXPBETA1.4, ... expansin B2 (.1) Lus10027223
[exp]
0 1
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Lus10003288
[exp]
1.0 0.8831
AT1G68540 TKPR2, CCRL6 tetraketide alpha-pyrone reduc... Lus10035016
[exp]
2.4 0.8685
AT3G53010 Domain of unknown function (DU... Lus10042635
[exp]
2.4 0.8360
Lus10022574
[exp]
2.6 0.8318
Lus10035602
[exp]
5.5 0.8103
AT2G33770 ATUBC24, UBC24,... UBIQUITIN-CONJUGATING ENZYME 2... Lus10001214
[exp]
6.9 0.8434
AT4G37990 CAD-B2, ATCAD8,... CINNAMYL-ALCOHOL DEHYDROGENASE... Lus10038536
[exp]
7.5 0.8543
AT1G09794 Cox19 family protein (CHCH mot... Lus10019951
[exp]
7.9 0.7653
AT4G35690 Arabidopsis protein of unknown... Lus10028382
[exp]
14.5 0.7841
AT3G14260 Protein of unknown function (D... Lus10008485
[exp]
16.9 0.7940

Lus10027223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.