Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038935 [exp] 272 / 5e-91 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 125 / 1e-33 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038470 [exp] 116 / 6e-31 ND / Lus10038468 [exp] 116 / 6e-31 ND / Lus10027245 [exp] 103 / 7e-26 ND / Lus10038967 [exp] 97 / 8e-23 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027244 [exp] 94 / 4e-22 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 87 / 7e-20 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10014161 [exp] 81 / 2e-17 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 42 / 0.0003 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027225 pacid=23145510 polypeptide=Lus10027225 locus=Lus10027225.g ID=Lus10027225.BGIv1.0 annot-version=v1.0 ATGCAGTACCCCTCATGTTATCAATCTCTGAAAGCTCTGGAATTGCAGCGAACACTTGTAGAACAACCCGAGGTTAAATTGTTGTTTCGTTTCCAACTGT TTGAATCTCTTATTCTGATAAGCTGCGGCATCACTGCAGATGATCCTTTTGCTAACTTCGCCAGGTTGGAAACCCTGAAGCTGGTCGATCCGGGTAGAAT GTCATACAAACAGACTGGTGTTCTGAAAGTAACTGACCCTAAACTTCTCAACTTGGAGATCGTTTCGCCAATATTCCAAGGTCTTCAAATCAATGCTCCC AAACTCCGATCTTTCAGTCTTAAGATTTTTCTTTCACATTGTGCACAAGTGTCCAAGAACTCGGATGTTCCTTCCCTCAATCTGGAGTTTGATGTTTGGT GGCATCGATACCAAGAGGCAGCTCGACAACTTGTTCGACATTTTTGCAGAATGTACAGGCTCTCAATCTGGAGTTTCTACCCAATAATGAAGTCCTTGAA TTTGAAGTGTTCTAACGGAGCATCTTCCGACGTACTTGATAAAGTGATTCGTTACTTTCTTGGAGCCGGCTATCATAATGAAGAAGATAAGCATTTTACA GTTGAGAAGTTGAGAAGCTATAGTGATGCAGCTAAACACGATTCTATTGTCAGCTTGTTAAATCAGGTTGGACTACTCGTAGATTTACTTCATGGATGTT GTTTCTATCTTACATTACTGCTAGATAAACTCCCAGAGTTCATATTGTTAGGCAATTCGATGTAA
AA sequence Show only first row Show all	>Lus10027225 pacid=23145510 polypeptide=Lus10027225 locus=Lus10027225.g ID=Lus10027225.BGIv1.0 annot-version=v1.0 MQYPSCYQSLKALELQRTLVEQPEVKLLFRFQLFESLILISCGITADDPFANFARLETLKLVDPGRMSYKQTGVLKVTDPKLLNLEIVSPIFQGLQINAP KLRSFSLKIFLSHCAQVSKNSDVPSLNLEFDVWWHRYQEAARQLVRHFCRMYRLSIWSFYPIMKSLNLKCSNGASSDVLDKVIRYFLGAGYHNEEDKHFT VEKLRSYSDAAKHDSIVSLLNQVGLLVDLLHGCCFYLTLLLDKLPEFILLGNSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027225 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	3.2	0.8046
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	4.0	0.8471
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	4.2	0.8228
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	5.3	0.7754
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	6.9	0.7586
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	7.5	0.8394
					Lus10043057 [exp]	8.7	0.8216
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	16.0	0.8161
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	19.7	0.7637
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	20.2	0.7904

Compare expression of checked genes

Lus10027225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.