Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05000 134 / 1e-40 VPS28-2, VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) AT4G21560 126 / 2e-37 VPS28-1 vacuolar protein sorting 28, vacuolar protein sorting-associated protein 28 homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011243 [exp] 0 / 1 AT4G05000 383 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10018442 [exp] 0 / 1 AT4G05000 384 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035500 [exp] 132 / 1e-39 AT4G05000 366 / 8e-131 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Potri.011G043800 [exp] 128 / 3e-38 AT4G05000 364 / 7e-130 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF03997 [flax] [poplar] VPS28 VPS28 protein
Representative CDS sequence Show only first row Show all	>Lus10027228 pacid=23145534 polypeptide=Lus10027228 locus=Lus10027228.g ID=Lus10027228.BGIv1.0 annot-version=v1.0 ATGCCAGAAGCTCATCGCTCATTCCAAGACACTGTCCTCAACCTTAAAGGACCAGATCCCGAGCATCGAGAGGTTTGCAGACAGCTACAAGATGGACTGC CTCGCGGCCATAAACCGACTTGTGATATCCGGTGTTCCTGCCACTGTGGAACACAGGACAACGGTGGCTGCATCTTCGACTACATCGGCTGCAACGGGTG CGTGCAGAACTATATAACTGCGATGGACTCGTTGAAGCTGAACATGGTCACTGTTGACCAGGTGCATCCTTTGCTGTCGGATCTATCGGCCTCGCTTAAC AAGCTGAGCATCTTGCCACCTGATTTCAAAGGGAAGATGAAGATGAAAGAGTGGATTTCGAGGATGGCTAAGATGGGGGCGTCTGATGAGCTGACCGAGC AGTAG
AA sequence Show only first row Show all	>Lus10027228 pacid=23145534 polypeptide=Lus10027228 locus=Lus10027228.g ID=Lus10027228.BGIv1.0 annot-version=v1.0 MPEAHRSFQDTVLNLKGPDPEHREVCRQLQDGLPRGHKPTCDIRCSCHCGTQDNGGCIFDYIGCNGCVQNYITAMDSLKLNMVTVDQVHPLLSDLSASLN KLSILPPDFKGKMKMKEWISRMAKMGASDELTEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	2.8	0.8263
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	4.1	0.8411
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	10.5	0.8092
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	10.8	0.7685
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	13.6	0.8301
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	15.7	0.8134
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	17.4	0.8008
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	19.8	0.7876
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	20.3	0.8136
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	21.4	0.8116

Compare expression of checked genes

Lus10027228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.