Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23220 54 / 7e-09 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G21400 52 / 2e-08 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G21410 52 / 3e-08 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G00970 52 / 3e-08 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G21380 51 / 3e-08 ARK3 receptor kinase 3 (.1) AT1G65790 51 / 6e-08 ARK1 receptor kinase 1 (.1) AT1G65800 51 / 6e-08 ARK2 receptor kinase 2 (.1) AT4G11480 50 / 7e-08 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT4G23190 50 / 1e-07 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23310 49 / 2e-07 CRK23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038940 [exp] 109 / 3e-29 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10009631 [exp] 87 / 9e-21 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10018381 [exp] 56 / 9e-10 AT4G23180 283 / 3e-91 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 54 / 4e-09 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 54 / 5e-09 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10025242 [exp] 52 / 8e-09 AT1G11340 162 / 1e-46 S-locus lectin protein kinase family protein (.1) Lus10005137 [exp] 52 / 2e-08 AT1G11340 225 / 1e-68 S-locus lectin protein kinase family protein (.1) Lus10007633 [exp] 52 / 3e-08 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007602 [exp] 51 / 6e-08 AT1G65800 788 / 0.0 receptor kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055500 [exp] 92 / 2e-22 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028700 [exp] 57 / 5e-10 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 56 / 1e-09 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 56 / 1e-09 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029800 [exp] 55 / 2e-09 AT4G23220 568 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029100 [exp] 55 / 3e-09 AT4G23220 570 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.004G026350 [exp] 54 / 5e-09 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G023550 [exp] 54 / 5e-09 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G028466 [exp] 53 / 1e-08 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037100 [exp] 52 / 2e-08 AT4G21380 982 / 0.0 receptor kinase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027229 pacid=23145451 polypeptide=Lus10027229 locus=Lus10027229.g ID=Lus10027229.BGIv1.0 annot-version=v1.0 ATGTGCATTCAAATAGCGCTTCTATGCTGCCAGGAGACCGTGTTCGATAGGCCGGACATGAACTCGGTTAACCTCATGCTCTCGAGCGACTCGTTTACCT TGCCCGAACCGGGTAAGCCAGGAATGCAAGGCAGGGTAGTAAGATGGACGACTACCACCACCACCGAGGGAACCACGTCGGGTTTGACTAACGCTGGCAC AACGAGGCCCGGTGGTGTCACCGGAGGGAACAACAGTTATTCTTCCCGCAACTCCATCTCTGTTTCCTCCATTGATGAAGCCATTACTGCTACAGTTACT ACTGCCAGCTTATCCCGAGTTTCTATATCTCTTCAAACATACTATGGAGGTGAAGCTATGGAGCGAGAGCGAGAGATGTATGAGAACTTTGAGGAGCTCT ACGCAATAATCAAGGCCACTGAGAAGCTCGAGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10027229 pacid=23145451 polypeptide=Lus10027229 locus=Lus10027229.g ID=Lus10027229.BGIv1.0 annot-version=v1.0 MCIQIALLCCQETVFDRPDMNSVNLMLSSDSFTLPEPGKPGMQGRVVRWTTTTTTEGTTSGLTNAGTTRPGGVTGGNNSYSSRNSISVSSIDEAITATVT TASLSRVSISLQTYYGGEAMEREREMYENFEELYAIIKATEKLEKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027229 [exp]	0	1
AT2G37480			unknown protein		Lus10025314 [exp]	3.7	0.8983
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	6.3	0.8968
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	17.0	0.8712
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	19.3	0.8959
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	22.6	0.8769
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	26.3	0.8915
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10025690 [exp]	26.5	0.8819
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	28.6	0.8925
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	31.7	0.8521
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	38.4	0.8479

Compare expression of checked genes

Lus10027229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.