Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 276 / 1e-89 Protein kinase superfamily protein (.1.2) AT4G21390 282 / 1e-87 B120 S-locus lectin protein kinase family protein (.1) AT1G61360 279 / 3e-87 S-locus lectin protein kinase family protein (.1.2) AT1G11340 281 / 1e-86 S-locus lectin protein kinase family protein (.1) AT4G27300 278 / 2e-86 S-locus lectin protein kinase family protein (.1) AT1G61610 276 / 2e-85 S-locus lectin protein kinase family protein (.1) AT1G11330 275 / 4e-85 S-locus lectin protein kinase family protein (.1.2) AT4G27290 274 / 4e-85 S-locus lectin protein kinase family protein (.1) AT4G11490 270 / 9e-85 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G23180 270 / 2e-84 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038940 [exp] 471 / 2e-166 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10009631 [exp] 397 / 5e-137 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10018379 [exp] 285 / 5e-90 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10037865 [exp] 287 / 2e-89 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 278 / 5e-88 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037733 [exp] 270 / 6e-88 AT4G21380 402 / 9e-134 receptor kinase 3 (.1) Lus10007632 [exp] 279 / 8e-88 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10037732 [exp] 282 / 1e-87 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10018408 [exp] 283 / 4e-87 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055500 [exp] 385 / 9e-133 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024632 [exp] 278 / 9e-91 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G413800 [exp] 288 / 4e-90 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G026350 [exp] 284 / 5e-90 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G125801 [exp] 281 / 3e-89 AT4G27290 659 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 286 / 4e-89 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025700 [exp] 279 / 7e-89 AT4G27290 576 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 285 / 2e-88 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G437950 [exp] 272 / 2e-88 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.010G109700 [exp] 271 / 4e-88 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027230 pacid=23145587 polypeptide=Lus10027230 locus=Lus10027230.g ID=Lus10027230.BGIv1.0 annot-version=v1.0 ATGATTGTCTTCGGTCTGACCGAATCCCAACCATTTTCGCTTTATTACCCATCAAATCCGCGAAAAAAAACAAAATTCAATCCCAAAGGTCAACAACTCC CAACGATCACCGGTGACGACGAACCCCGCCGTCATTTCTCAACCTTCTCCGCCAAGCTCAAAGCTTTGAGCTTCCATGCCTTACAATTACAAACGATGCG CCTGATTTCGAACTTTTGCCGATGGCTCGTTGCGAAAATTGATTCTCGTCTTGCCAAGCCGTCGGATGGTAATGATGGTGCCGCCGCCTCCGCCGCCACT TCCGACCTCTTCTTCGACCTCCACACGCTTCAAGTCGCCACCAATGTCTTCTCTGAGCTGAACCAACTAGGCCAAGGAGGCTTTGGTCCTGTCTACAAGG GGTTGATGCCAGATGGGCAAGAAATCGCGGTGAAGAAGCTCTCATTGAATTCGAGACAAGGACTGACAGAATTCACCAACGAGGTGAAGCTACTACTGAA GATCCAGCACAAGAATCTGGTCACATTGCTAGGCTGCTGTGCCGAAGGACCCGAGAAGATGCTCGTCTACGAGTATCTTCCGAATAAAAGCCTCGATTAC TTCCTCTTCGGTAAGAACAAAGCCTCTGCTTCCTTGGATTGGGCGACGAGATTTCACATAATTACAGGAGTCGCGAGGGGTATTCTTTACCTCCACGAAG AAGCTCCAGTGAGGATCCTTCACAAAGACATCAAAGCCAGTAACATACTGCTGGATTCGAGGCTGAGCCCTAAGATATCCGATTTTGGACTCGCCAGGCT GTTTTCGGAGGACGACACGCATGTGAAGACGTTCAGTATATCTGGTACTCCTGGCTATATGGCACCAGAGTATACGATGCGCGGGTATCTTTCTGTCAAG ACTGATGTGTTCAGTTACGGTATCCTTGTATTGGAAATCGTGGGCGGGAGGAAGAATCTCGATCCCGGACTTGGTCAGGACCATGCTGATCTCTTGAGTT ATGTAAGTTGTAGAATCGTATCGCGAAACCGCAAGATTCCACGACTTTTAATCGAGATTCTTCCTGATTTCATGAACCACTCTACTTTGCTTGTAGGCAT GGAAACTCTACCAAGCAGGAAACACACTCGAGCTAGTTGA
AA sequence Show only first row Show all	>Lus10027230 pacid=23145587 polypeptide=Lus10027230 locus=Lus10027230.g ID=Lus10027230.BGIv1.0 annot-version=v1.0 MIVFGLTESQPFSLYYPSNPRKKTKFNPKGQQLPTITGDDEPRRHFSTFSAKLKALSFHALQLQTMRLISNFCRWLVAKIDSRLAKPSDGNDGAAASAAT SDLFFDLHTLQVATNVFSELNQLGQGGFGPVYKGLMPDGQEIAVKKLSLNSRQGLTEFTNEVKLLLKIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDY FLFGKNKASASLDWATRFHIITGVARGILYLHEEAPVRILHKDIKASNILLDSRLSPKISDFGLARLFSEDDTHVKTFSISGTPGYMAPEYTMRGYLSVK TDVFSYGILVLEIVGGRKNLDPGLGQDHADLLSYVSCRIVSRNRKIPRLLIEILPDFMNHSTLLVGMETLPSRKHTRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10027230 [exp]	0	1
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10042278 [exp]	8.9	0.8863
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	14.7	0.9112
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	26.8	0.8815
AT5G58160			actin binding (.1)		Lus10035830 [exp]	43.9	0.8781
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	53.2	0.8465
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	74.4	0.8656
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	84.9	0.8449
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	87.8	0.8662
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	93.8	0.8619
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	95.2	0.8583

Compare expression of checked genes

Lus10027230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.