Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15220 212 / 2e-71 ATCCMH cytochrome c biogenesis protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038941 [exp] 332 / 6e-119 AT1G15220 212 / 2e-71 cytochrome c biogenesis protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052000 [exp] 241 / 4e-83 AT1G15220 216 / 8e-73 cytochrome c biogenesis protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03918 [flax] [poplar] CcmH Cytochrome C biogenesis protein
Representative CDS sequence Show only first row Show all	>Lus10027231 pacid=23145408 polypeptide=Lus10027231 locus=Lus10027231.g ID=Lus10027231.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAAGCGATGATGAAGTTAAGAACTCGCGAATTATGGAGGCTCGTGCCAGAAACATTAGTCACAATGTCAGGTGCACCGAGTGTGGGAGTC AGTCCATTGAAGATTCTCAAGCTGACATTGCCGTTCTCCTCAGGAAGTTGATCCGTGAGGAGGTCCAGGCTGGAAAATCCGACAAAGAGATCTTCAAGAA GCTAGAGGATGAATTCGGAGAGACGGTTCTCTACGCACCGAAGTTCGATTGGCAAACTGCCGGGATATGGCTATCACCACTTTTGATTGTAGGTACTGCT GGAGGGATATGGGCTTACGGAAAGCACAGGCAGAATACCAATGTGCATATCATGGCACTAAATCTCGTGAGGGGCGTTACTCTAACGCCGAAAGAGAAGG AGACTATGCTGGAGATTCTAACGCCTCCTCCCCCACAACGAGCCCCTCTTCTTCTGTCCTGGTGGAGGAAAATGATAACGTGA
AA sequence Show only first row Show all	>Lus10027231 pacid=23145408 polypeptide=Lus10027231 locus=Lus10027231.g ID=Lus10027231.BGIv1.0 annot-version=v1.0 MENKSDDEVKNSRIMEARARNISHNVRCTECGSQSIEDSQADIAVLLRKLIREEVQAGKSDKEIFKKLEDEFGETVLYAPKFDWQTAGIWLSPLLIVGTA GGIWAYGKHRQNTNVHIMALNLVRGVTLTPKEKETMLEILTPPPPQRAPLLLSWWRKMIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10027231 [exp]	0	1
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002682 [exp]	10.7	0.7428
AT5G63460			SAP domain-containing protein ...		Lus10022457 [exp]	15.3	0.8068
AT1G55170			unknown protein		Lus10041450 [exp]	15.5	0.7487
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	28.2	0.7866
AT3G56720			unknown protein		Lus10038984 [exp]	29.1	0.7947
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	30.5	0.7460
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	31.3	0.7946
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	37.4	0.7742
AT1G14990			unknown protein		Lus10035021 [exp]	43.7	0.7234
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006318 [exp]	47.0	0.7174

Compare expression of checked genes

Lus10027231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.