Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18295 55 / 8e-10 Protein of unknown function (DUF1639) (.1) AT1G25370 52 / 7e-09 Protein of unknown function (DUF1639) (.1) AT4G17440 48 / 3e-07 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G68340 48 / 3e-07 Protein of unknown function (DUF1639) (.1) AT3G60410 47 / 7e-07 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G48770 45 / 2e-06 Protein of unknown function (DUF1639) (.1) AT4G20300 40 / 0.0001 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G55340 38 / 0.001 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038942 [exp] 102 / 7e-30 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10035144 [exp] 52 / 2e-08 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10010984 [exp] 46 / 2e-06 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10004378 [exp] 45 / 4e-06 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010312 [exp] 38 / 0.0007 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122700 [exp] 67 / 4e-14 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 66 / 8e-14 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.012G055200 [exp] 60 / 1e-11 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.002G136200 [exp] 54 / 3e-09 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.014G044800 [exp] 50 / 5e-08 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.013G057600 [exp] 39 / 0.0004 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 39 / 0.0007 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 38 / 0.0009 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10027232 pacid=23145397 polypeptide=Lus10027232 locus=Lus10027232.g ID=Lus10027232.BGIv1.0 annot-version=v1.0 ATGGGGAACCCAGCGAGTCCTCCGCTGCGTCAAAATCCCTCCTCCTCCTCCTCCCCCGCCGCCTCATCATCATCACCACCACCGGCACTCATCCGTCGTC GAGGAGGAGGAGGAGCATTTTGGGAGATTGAGTCTTCTCCGGCGGCGAAGAGGCAGTGTTTGGAGTCTCCGCCGCCACTATCGATGAATGGAAAAGTCAA CAACATGAAGCTGTGTGTTCCGCTGACCAGGGATGAGATTGAAGAAGATTTCATGGAGATTGCCAGGATGAGACCCCCCAGGAGACCCAAGAAGCGGCCC AGAATTGTTCAGAAGTATATGGATTTAATGTTCCCAGGGCTATGGATAACTGAAGTCACAACAGATCTATACAAAGTTCCTGAAGTACAGGAATCATGA
AA sequence Show only first row Show all	>Lus10027232 pacid=23145397 polypeptide=Lus10027232 locus=Lus10027232.g ID=Lus10027232.BGIv1.0 annot-version=v1.0 MGNPASPPLRQNPSSSSSPAASSSSPPPALIRRRGGGGAFWEIESSPAAKRQCLESPPPLSMNGKVNNMKLCVPLTRDEIEEDFMEIARMRPPRRPKKRP RIVQKYMDLMFPGLWITEVTTDLYKVPEVQES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68340			Protein of unknown function (D...		Lus10027232 [exp]	0	1
AT4G37290			unknown protein		Lus10010255 [exp]	7.7	0.9808
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	11.8	0.9796
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	14.9	0.9795
AT4G37290			unknown protein		Lus10019310 [exp]	16.2	0.9787
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	18.6	0.9786
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	19.9	0.9517
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	21.9	0.9783
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	22.0	0.9779
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	22.9	0.9760
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	24.2	0.9776

Compare expression of checked genes

Lus10027232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.