Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44000 480 / 2e-169 Glutathione S-transferase family protein (.1) AT4G19880 251 / 2e-80 Glutathione S-transferase family protein (.1.2.3) AT5G45020 234 / 2e-74 Glutathione S-transferase family protein (.1.2) AT5G44990 233 / 2e-73 Glutathione S-transferase family protein (.1.2.3) AT5G02780 46 / 2e-05 GSTL1 glutathione transferase lambda 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038943 [exp] 385 / 8e-133 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1) Lus10036209 [exp] 243 / 1e-77 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10038348 [exp] 243 / 2e-77 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10014304 [exp] 218 / 4e-68 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10026012 [exp] 82 / 1e-18 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2) Lus10005510 [exp] 81 / 6e-17 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3) Lus10015049 [exp] 42 / 0.0005 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192300 [exp] 516 / 0 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1) Potri.015G121600 [exp] 246 / 2e-78 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3) Potri.016G083500 [exp] 43 / 0.0002 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G175050 [exp] 41 / 0.0003 AT5G62480 66 / 4e-14 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) Potri.008G046800 [exp] 42 / 0.0004 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027233 pacid=23145411 polypeptide=Lus10027233 locus=Lus10027233.g ID=Lus10027233.BGIv1.0 annot-version=v1.0 ATGTACTTGACCGGCGGTGCTAATCTACTGACCAGCTACCGCTCTCCGGTGACCTCGTCGTCGGGAGGAGCACGAATATCTTTGAATCGAACTTCCCAGC CTCTGAATCCGACGGCGAGCCTCCTCACCAGCGTCACGAAGCTCCTGTGGGGACCATCTCTCCCGCCGGGACTCCTCATCTCCACCGTCCGTACGGGGTG GAGCACGGCCTGGAACCTGATGATGTCCCAGCTAGCACCGTCCGATTCCTCCGGCAATTACACCCGACCCCCTTCCAAATTCCGCCTCAGTCCCTCACCG GACCCGCGATTTTCAGGCAACCTCCAGCTGTACGTCGGCCTCCCATGTCCCTGGGCTCACCGCACTCTCATCGTCCGAGCCCTAAAGGGACTCCAAGACG CGATTCCCGTCTCCATCGCAGCGCCAGGCCAAGACGGCTCGTGGGAGTTCTCCTCCGGCGAGAACAGTGTCCTTGGCGACGTGCTTGTGCCGGGGAAGGA TAGCTCTAACGGATGCAGGACGTTGAAGGAGGTTTACAACCGGAGGAGAGGCGGCTACAGTGGGCGAGCCACGGTGCCGATGCTGTGGGACTCGGCGAGG AAAGAAGTTGTGTGTAACGAGAGCTACGACATTATCGAGTTCTTCAATTCCGGGTTGAATGATCTGGCCGGAAATCCAGAGCTGGACCTCTCGCCGGAGT CTTTGAAAGGGGAGATCGACGAGTGGAATCGATTGATCTATCCCAATATTAACAATGGAGTATACAGATGCGGATTTGCTCAGAGTCAAGAAGCCTATGA CCGATCGGTGAACGATCTCTTTGAAGTGCTGGAAAAAGTCGAGGAACACCTCCAGGCTTCCCGCTATTTGTGCGGCGAGAGGCTGACACTTGCAGACGTG TGCCTGTTTACGACGTTGATTAGGTTCGATCCGGTGTACAATGTTCTGTTCAAGTGTACCAAGAAGAAACTGGTCGAGTACCCCAATCTCCATGGCTACA TGCGCGATATTTACCAGATGCCAAAGGTTGCAGTGACCTGCAATTTTGGTGCTATCATGGATGGCTACTACAGAACGCTGTTTCCGTTGAACCCGGGAGG CATCTGTCCCGCGGTGCCTTTGGGGTCGGAGATTCAGAATCTCTCGAAGCCGCACAATAGGGAATCTTTGTCTTCTTCAGATTCGAAGAGTAGGGGAGTC TTATGCTGA
AA sequence Show only first row Show all	>Lus10027233 pacid=23145411 polypeptide=Lus10027233 locus=Lus10027233.g ID=Lus10027233.BGIv1.0 annot-version=v1.0 MYLTGGANLLTSYRSPVTSSSGGARISLNRTSQPLNPTASLLTSVTKLLWGPSLPPGLLISTVRTGWSTAWNLMMSQLAPSDSSGNYTRPPSKFRLSPSP DPRFSGNLQLYVGLPCPWAHRTLIVRALKGLQDAIPVSIAAPGQDGSWEFSSGENSVLGDVLVPGKDSSNGCRTLKEVYNRRRGGYSGRATVPMLWDSAR KEVVCNESYDIIEFFNSGLNDLAGNPELDLSPESLKGEIDEWNRLIYPNINNGVYRCGFAQSQEAYDRSVNDLFEVLEKVEEHLQASRYLCGERLTLADV CLFTTLIRFDPVYNVLFKCTKKKLVEYPNLHGYMRDIYQMPKVAVTCNFGAIMDGYYRTLFPLNPGGICPAVPLGSEIQNLSKPHNRESLSSSDSKSRGV LC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	0	1
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	2.0	0.9165
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	5.1	0.8457
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	5.3	0.8796
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	7.5	0.8533
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	9.8	0.8645
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	12.1	0.8278
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	12.4	0.8772
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024807 [exp]	13.0	0.8170
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	14.0	0.8573
AT1G18060			unknown protein		Lus10041995 [exp]	14.0	0.8602

Compare expression of checked genes

Lus10027233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.