Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007254 [exp] 176 / 3e-51 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025569 [exp] 137 / 7e-39 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10013551 [exp] 133 / 6e-36 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10019772 [exp] 125 / 3e-33 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10008326 [exp] 117 / 2e-32 ND / Lus10017291 [exp] 119 / 7e-32 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10013548 [exp] 111 / 2e-29 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 105 / 2e-27 ND / Lus10008233 [exp] 90 / 4e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027235 pacid=23145570 polypeptide=Lus10027235 locus=Lus10027235.g ID=Lus10027235.BGIv1.0 annot-version=v1.0 ATGCCACTCAAGTCGATCAGTCGGGCCAACTGGTTTGACAATGTACAACAAGTTGTCGAGCAAATCTCCAAGCTTATAACCGATTCATTCGAGAAGATGG TGCTTAAGGACTTGCTATCACATCTGGCTGAGTTTAGGAACACCATCCCTCAATCTTTGTCTGTCATTGAAAATTCGCGCCATGTTGAAACAACATCGGC TCAGACTACTAAAGTGCTGGAAGTATGTCTTTTACTGAGACAAAAGCAACTGACGGTCTTGGATTCTGAAGTCACAAGGTTGGACTCAGAGATTCAGCAG CTGGTTGCTCTTCAAGACAAACTTACTCGTGAGAAGAATTTGACCGTAACTGAATTGGAAGTCGCCAACGCAGAGGCTTCAAGGGAATTGGCAGAATTGG AGAAGCAACGAACAGAAGGCAAGGAAGGTTTGGAGAAGAGGTTGAGAGCCAACGAGATAGTAGCTCAATCCAGTACAAGCTGGAAGCTTTTCAAGGATAA ATTGGGACTATACCACGATCGAACGAGCATCGTGGTGATCATTCGAGAAGTCGGTATTAACTTGCTTTTGTAG
AA sequence Show only first row Show all	>Lus10027235 pacid=23145570 polypeptide=Lus10027235 locus=Lus10027235.g ID=Lus10027235.BGIv1.0 annot-version=v1.0 MPLKSISRANWFDNVQQVVEQISKLITDSFEKMVLKDLLSHLAEFRNTIPQSLSVIENSRHVETTSAQTTKVLEVCLLLRQKQLTVLDSEVTRLDSEIQQ LVALQDKLTREKNLTVTELEVANAEASRELAELEKQRTEGKEGLEKRLRANEIVAQSSTSWKLFKDKLGLYHDRTSIVVIIREVGINLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027235 [exp]	0	1
					Lus10008904 [exp]	1.4	0.8252
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10024054 [exp]	2.2	0.7456
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10002715 [exp]	2.8	0.7910
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10040230 [exp]	2.8	0.7966
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	13.5	0.7116
					Lus10029249 [exp]	16.6	0.7962
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	17.8	0.7236
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	18.0	0.6747
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	18.9	0.6461
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	19.1	0.6821

Compare expression of checked genes

Lus10027235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.