Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48960 184 / 1e-58 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G07020 44 / 5e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G03720 40 / 0.0004 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038945 [exp] 300 / 2e-104 AT1G48960 236 / 4e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 40 / 0.0004 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059100 [exp] 194 / 7e-63 AT1G48960 175 / 3e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 46 / 4e-06 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10027236 pacid=23145383 polypeptide=Lus10027236 locus=Lus10027236.g ID=Lus10027236.BGIv1.0 annot-version=v1.0 ATGGAAGTGCGGAAAATAGTGGTGGTGGTTGAAGATGTAGAGGCATCTAGAACAGCCCTCCGATGGGCACTCCACAATTTCCTCCGCCACGGCGATCTCT TGACTCTCCTCCATGTTTACTCCAAGAAGAATAAGAATAAGAAGAAGCGGCTTCTCCGCCTGCAAGGCTTCCAGCTGGCGCTCTCTTTCAAAGAAATCTG CAACTCCTCCTCCTTCTTCAATACGAATGTGGAGATAATTGTGACGGAAGGGGAAGATGAAAGTGGGAAGATTGGCGAGATCGTGAGGGCGATTGGTGCT TCTGCGGTTGTTGTTGGACTCCATGATCGTAGCTTCATGTACAGGTTGGCAATGACTCATACCAACGTAGCAAGCAACTTCAATTGCAGGGTGCTCGCAA TCAAACACCCAACGGTATCAAGACCCAACACCAGAACAAGCAGCAGCAGCAGCTGGACCAGTTCTTCAGCCACGCCATCTCCAATGTCGGATTGCCAACA TAACTTGGACGTTTCCCAGATTGAAATCGGCAGGCTAGAGATTCCTGAAACTCCATCGCCTAGAATTCCTTACAGAGTATGCCCGGATCCTTATTCGATA CTGTGGAGATGGAAGAAGAGGAGGAAGCACTAA
AA sequence Show only first row Show all	>Lus10027236 pacid=23145383 polypeptide=Lus10027236 locus=Lus10027236.g ID=Lus10027236.BGIv1.0 annot-version=v1.0 MEVRKIVVVVEDVEASRTALRWALHNFLRHGDLLTLLHVYSKKNKNKKKRLLRLQGFQLALSFKEICNSSSFFNTNVEIIVTEGEDESGKIGEIVRAIGA SAVVVGLHDRSFMYRLAMTHTNVASNFNCRVLAIKHPTVSRPNTRTSSSSSWTSSSATPSPMSDCQHNLDVSQIEIGRLEIPETPSPRIPYRVCPDPYSI LWRWKKRRKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	2.8	0.9614
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	6.0	0.9584
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	6.9	0.9494
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	8.2	0.9520
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	8.3	0.9568
AT3G53400			unknown protein		Lus10026502 [exp]	10.2	0.9512
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	11.7	0.9509
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	14.0	0.9446
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	16.5	0.9497
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	16.7	0.9452

Compare expression of checked genes

Lus10027236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.