Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18580 246 / 5e-83 Nucleic acid-binding, OB-fold-like protein (.1) AT4G11060 100 / 7e-26 MTSSB mitochondrially targeted single-stranded DNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038946 [exp] 296 / 8e-103 AT3G18580 243 / 7e-82 Nucleic acid-binding, OB-fold-like protein (.1) Lus10031482 [exp] 103 / 4e-26 AT4G11060 277 / 4e-94 mitochondrially targeted single-stranded DNA binding protein (.1) Lus10015200 [exp] 94 / 1e-23 AT4G11060 202 / 2e-66 mitochondrially targeted single-stranded DNA binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058800 [exp] 234 / 6e-78 AT3G18580 261 / 2e-88 Nucleic acid-binding, OB-fold-like protein (.1) Potri.013G011800 [exp] 97 / 9e-25 AT4G11060 279 / 2e-96 mitochondrially targeted single-stranded DNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10027237 pacid=23145484 polypeptide=Lus10027237 locus=Lus10027237.g ID=Lus10027237.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTTCGATCGCAACCATTTCCCGCAGGCTCTCCCGCTCCATTCTCTCAAACCATAACATCCCTCACGCTTCCGTCCCCTTCTGCACAACCA CTGCCTCATCTCCCGAGGTCGACCCGGACTCCATCAACCCAGACGCCGATCCAATCCCCAGCTCCGCCGCCGCTGCCGACTCACCACCATCAACACCGCG TCCCAATTCCAACGAACGCGTCGTGTACGATCGCCCGCTCGAGGATGGGCTTGACATCGGCGTATACAAGGCGATACTTGTGGGGCAAGTGGGGCAGAGT CCGTTTCAGAAGAAGCTGAAAGGCGGGAGAACGGTGACTTTGCTGTCTGTGGGAACTGGAGGGATTCGGAATAATCGAAGGCCGTTGGAGAATGAGGAGC CGAGGGATTATGCGAATCGGTGTGCTATTCAGTGGCATCGTGTATCTGTCTACCCGGAGAGATTGGGTGATCTTGTGATGAAGGAAGTTGTTCCCGGGTC GAATGTCTATCTGGAAGGGAACCTGGAGACAAAAATATTTACTGATCCAGTTACTGGCCTCGTGCGGCGTGTAAGAGAGATTGCTATTCGTGGCAATGGC CGAATCGTGTCGTTGGGAGGCGATGGCGCCACCCCTGGAGCTTCAGGGTTGAAAGGAGTTGGCTATTACTAG
AA sequence Show only first row Show all	>Lus10027237 pacid=23145484 polypeptide=Lus10027237 locus=Lus10027237.g ID=Lus10027237.BGIv1.0 annot-version=v1.0 MAATSIATISRRLSRSILSNHNIPHASVPFCTTTASSPEVDPDSINPDADPIPSSAAAADSPPSTPRPNSNERVVYDRPLEDGLDIGVYKAILVGQVGQS PFQKKLKGGRTVTLLSVGTGGIRNNRRPLENEEPRDYANRCAIQWHRVSVYPERLGDLVMKEVVPGSNVYLEGNLETKIFTDPVTGLVRRVREIAIRGNG RIVSLGGDGATPGASGLKGVGYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	2.0	0.9191
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	3.9	0.9002
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	6.0	0.9117
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	6.3	0.9067
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	6.7	0.8912
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	7.7	0.8967
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	8.1	0.9108
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	8.5	0.8868
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	9.9	0.8937
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	11.2	0.8829

Compare expression of checked genes

Lus10027237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.