Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48950 438 / 1e-146 C3HC zinc finger-like (.1) AT1G17210 148 / 5e-37 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038947 [exp] 933 / 0 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1) Lus10023288 [exp] 190 / 7e-51 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10038518 [exp] 188 / 3e-50 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052400 [exp] 439 / 1e-144 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1) Potri.011G081200 [exp] 197 / 3e-53 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Potri.012G058550 [exp] 155 / 6e-41 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0417 [flax] [poplar] BIR-like PF07967 [flax] [poplar] zf-C3HC C3HC zinc finger-like
Representative CDS sequence Show only first row Show all	>Lus10027238 pacid=23145517 polypeptide=Lus10027238 locus=Lus10027238.g ID=Lus10027238.BGIv1.0 annot-version=v1.0 ATGGTAGGGGAATCTGAGAAGAAGTTCCATTCCATCATGGACACGATCTTCAGCGCTCCCTCTAAGTCCTCTAGTTTGTCCGCGGGAGAGTCGTCGAGAG GGAAAAAGCGGCCGAATCCTGATTCTGCGTTAGCCTTCGTGGAGCCGAGATCGACGACGGCGGATATATTTGATGCGTTCCGTCGTTCTACTGTAGCTCA GAGTGGTGCTCATTTGTGTAGACCGTGGAGTAGAGGCGACCTCATGAGGAGGTTGGCTACTTTCAAGTCTATGACGTGGTTCGCTAAGCCAAAGGTTGTA AGCGCTGTAAATTGTGCAAGGAGGGGATGGATCAACGTGGATACAGATATCATAGCCTGTGAAACATGTGGTGTACGTCTCCTCTTTTCAACTCCATCAT CCTGGGCTCAGCAACAAGGCAAGGGAACCTCGGCTTATCTTTTTTTCATCTGTTTGTTTCCAGTTGAGAAAGCAGCATTGGTGTTTAGCTTGAAGCTGGA TAGCGGACACAAGTTACAGTGTCTGTGGGTTGACAATGCATGTGCTGAGACATTGGCAGAGTTTCCCCTCACCCCGTTTCCAATTCTAGTTGATAAATTC AAAGAACGTTCGTTGAAGCTTCTACGTCTTCTCGCACTTCCTGTAGTTTCATCTTCTGCCATTGAACACATGAGAAACCCACTCCTGGAAGAATTTCTTA GCCAGTCTACTACACTTGACCTTGGAAATGGGTCCGTCAGCATGTCTGGAATGGAGCTTGTTGGAAATGAGAATGAAGCTGAGAATGCAAAGTTGTATTA CCAGGCACAAAAGCTAATAAGTCTGTGTGGTTGGGTACCACGGTCACTACCTTATGTTGTTGATTGCATAGAGAACCCAACAGGTTCCGAAAGAGGGAAG TCATCCCTTCCTGAATCTACTAGACAGAGTTCAAGCATCAATGTCCATTCAGCTGCTACCGAAGAAAGAGCAGAGGTCACTGAAGAATCTGTCAGCCATG CCAGCTCACGTGTCGATCCTAACTCAGTAGTTTTGGATTGTGGATTCTGTGGAGCTAGTGTAGGATTATGGACCTATTCTACAGTCCCTAGGCCTACAGA GTTATTTAGGATGTCTGGACTTGCAGAATTGACTAGTAACCCGAGTACCGGGCAAGAAACTGAAGACCCGGCTAACAAAGTTGGAGCTGTACCTTCTTCC TCGAACAGTCTTCTGTCTCCTCCTTCCAGTATGAAGTTCACTATTGCTGGCGGTCCTCCTCCTACAAAACAGAACTTCAAAGCGACAATTTCGGTTCCGA TTATAGGGAGGAATTTGAGGGCCAGGCTTTCCGATGGCATTGATTTCAGAGACCGTCCAAGTGGAACCCAGCCGGATTCTGGATCTCAGGCTGATAAACA TTTATCTCAATCTGAAACATTGAGCAAAGCAAGTGATCAGGAGCTGCAGGTTAGTGGTACAAGCAATGACCAATCGTCTGGGCTCGATGCTGAAGGTTGT GAAACTCCACAGCTGTTGTTGGAAGCAAGCACAAGTGTTGCCCCAAATACAGAGTTGAACCAAACTGGCACTGAAGGTGTCATTGAAGAAGGATCACAGA AAGAAGGAGAAATTGTGGCCTATGGTACCGGGAAGGATGTGAAGGAACTCTCATCAGGCGGAACAACCATGGATTTCGACCCTATTCGACAGCACAGACA TTTCTGTCCGTGGATTATATCGAGCAACAGTGGCACACCAGGCTGGCAGCAGACGTTGACCGCTCTGCAAAGCCAGGACGATCCGTCTTGTTCTACTCCG AAAACTCCTTGTTCAACTTCTTCCATCTTCAAGGTCCGCGATGCCATAACTTCGGTTCAGAAGCTTTTCGGATCACCATCGGCCAAACGACCGAAGGTCA CTCCTAGATCAAGCTGA
AA sequence Show only first row Show all	>Lus10027238 pacid=23145517 polypeptide=Lus10027238 locus=Lus10027238.g ID=Lus10027238.BGIv1.0 annot-version=v1.0 MVGESEKKFHSIMDTIFSAPSKSSSLSAGESSRGKKRPNPDSALAFVEPRSTTADIFDAFRRSTVAQSGAHLCRPWSRGDLMRRLATFKSMTWFAKPKVV SAVNCARRGWINVDTDIIACETCGVRLLFSTPSSWAQQQGKGTSAYLFFICLFPVEKAALVFSLKLDSGHKLQCLWVDNACAETLAEFPLTPFPILVDKF KERSLKLLRLLALPVVSSSAIEHMRNPLLEEFLSQSTTLDLGNGSVSMSGMELVGNENEAENAKLYYQAQKLISLCGWVPRSLPYVVDCIENPTGSERGK SSLPESTRQSSSINVHSAATEERAEVTEESVSHASSRVDPNSVVLDCGFCGASVGLWTYSTVPRPTELFRMSGLAELTSNPSTGQETEDPANKVGAVPSS SNSLLSPPSSMKFTIAGGPPPTKQNFKATISVPIIGRNLRARLSDGIDFRDRPSGTQPDSGSQADKHLSQSETLSKASDQELQVSGTSNDQSSGLDAEGC ETPQLLLEASTSVAPNTELNQTGTEGVIEEGSQKEGEIVAYGTGKDVKELSSGGTTMDFDPIRQHRHFCPWIISSNSGTPGWQQTLTALQSQDDPSCSTP KTPCSTSSIFKVRDAITSVQKLFGSPSAKRPKVTPRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	0	1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	7.7	0.8421
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	7.7	0.8602
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	9.7	0.8328
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	12.2	0.8401
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	14.7	0.8223
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	15.7	0.8220
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	16.7	0.8036
AT5G44150			unknown protein		Lus10039868 [exp]	17.4	0.7426
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	20.7	0.8170
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	21.6	0.8192

Compare expression of checked genes

Lus10027238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.