Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25670 367 / 1e-123 Leucine-rich repeat (LRR) family protein (.1) AT1G13230 364 / 4e-123 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 361 / 7e-122 RNI-like superfamily protein (.1) AT4G28560 160 / 3e-44 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G80080 149 / 8e-40 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G42800 148 / 1e-39 AtRLP29 receptor like protein 29 (.1) AT4G08850 137 / 7e-35 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 132 / 4e-33 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 127 / 3e-31 Leucine-rich repeat protein kinase family protein (.1) AT3G24240 122 / 8e-30 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038948 [exp] 683 / 0 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10034261 [exp] 406 / 2e-139 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 403 / 2e-138 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 160 / 9e-45 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10026208 [exp] 153 / 2e-41 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10010946 [exp] 148 / 1e-39 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10031383 [exp] 144 / 2e-37 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10003624 [exp] 137 / 1e-35 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10008242 [exp] 133 / 2e-34 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114700 [exp] 402 / 2e-137 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.001G202100 [exp] 170 / 2e-47 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G211800 [exp] 139 / 2e-36 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.002G008100 [exp] 137 / 1e-34 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008175 [exp] 136 / 2e-34 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.005G227600 [exp] 132 / 7e-34 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.002G007925 [exp] 129 / 4e-32 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008450 [exp] 127 / 2e-31 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 127 / 3e-31 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.017G151400 [exp] 123 / 6e-30 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10027239 pacid=23145376 polypeptide=Lus10027239 locus=Lus10027239.g ID=Lus10027239.BGIv1.0 annot-version=v1.0 ATGGAAGGGATCTCCAGAAAGAACATGTGCTGCTTGCTACTACTGTGGCAGCTTCTCTTGGTTGGAAACCTGCATCCATGTCGAGGAACAGAGGAAGAGG TTTCAGCTCCAATGGTGAAAGAAGAGAAAGAAGCCCTCTTTGCAGCCATTCAAGGGTTTGTAGGGAAATGGTGGAATGGGTCTGATCTTTACCCTGACCC TTGTGGTTGGACTCCAATCCAGGGAGTTTCCTGTGATGTCTTTAATGGCTACTGGTACACAACAAGCTTGCACATTGGACCAGTAATGGAGAACTCTCTC CAATGCAGTTCAAATCCCAGATTCACAATCCACCTCTTCCAACTCACCCACCTCCGTACTCTATCCTTCTTCAACTGCTTTCTCCATTCCCACACAAGAA TCCCCACTAACTGGGCAATCCTTTCCAACACCTTGGAAACTCTCGAGTTCCGATCGAATCCGTCCCTAGTCGGCTCGATTCCATCCTCCCTGGGCACCCT CAAGAACCTCAAGTCCCTAATCCTAGTGGAGAACGGATTGCAAGGCAGCATACCTACCGAGATTGGCAATTTGCTCAAGCTGAAGCAGCTGGTACTTTCA TCAAACAGGTTTTCTTCACAAATTCCTGAAACTTTCGGAGCTTTACGAAACCTCCTGATTCTTGACGCTAGCAGGAATTCGATCATCGGTCCGATCCCTA AGACGTTCGGATTGTTGACTTCTCTTCTGAAGCTCGATCTGAGCTACAATCGGATCGAATCAAACCTGCCCCAGGAAATCGGAAACCTGAAGAATCTCAC TCTACTCGACCTGAGAAACAACAAGCTATCAGACGGATTAGCACCTGAAATAGAATCGATGGTTTCGTTAAAGGAGCTTTCCCTCTCGGGAAATCCAATC ATCGGCGGGGAAATGACAGGGATTCAGTGGCGGAGAATGCAGACCCTGGAAATTTTGGATCTTTCCGGTACAGGCTTGATCGGAGAGGTCCCGGAGACGG TGGCGGAAATGAAGCGGCTGAGGTTTTTAGGGCTGCGAGATAACTTTCTGTCCGGGAAAGTGTCGCCGAAGCTTGCGGAGATGGAGAATCTGGGAGCTCT GTATCTCCAGAGCAATAATTTCAGTGGAGTTCTAGGGTTTCCGATGAGGTTTTTCGGGAGGATGGGGAGGAGATTTGCGGCTTGGGATAATCGGAATCTT TGCTATTTGGAAGAATCGACGTCGGAGGAGGATGAAGGGGCGATGGCGGGAAGGAATAGTATTCGCCGGCCACCTTATGGAGTTAAACGGTGCCGTTTGT GA
AA sequence Show only first row Show all	>Lus10027239 pacid=23145376 polypeptide=Lus10027239 locus=Lus10027239.g ID=Lus10027239.BGIv1.0 annot-version=v1.0 MEGISRKNMCCLLLLWQLLLVGNLHPCRGTEEEVSAPMVKEEKEALFAAIQGFVGKWWNGSDLYPDPCGWTPIQGVSCDVFNGYWYTTSLHIGPVMENSL QCSSNPRFTIHLFQLTHLRTLSFFNCFLHSHTRIPTNWAILSNTLETLEFRSNPSLVGSIPSSLGTLKNLKSLILVENGLQGSIPTEIGNLLKLKQLVLS SNRFSSQIPETFGALRNLLILDASRNSIIGPIPKTFGLLTSLLKLDLSYNRIESNLPQEIGNLKNLTLLDLRNNKLSDGLAPEIESMVSLKELSLSGNPI IGGEMTGIQWRRMQTLEILDLSGTGLIGEVPETVAEMKRLRFLGLRDNFLSGKVSPKLAEMENLGALYLQSNNFSGVLGFPMRFFGRMGRRFAAWDNRNL CYLEESTSEEDEGAMAGRNSIRRPPYGVKRCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	3.0	0.9537
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10021132 [exp]	3.7	0.9059
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	4.2	0.9337
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	4.9	0.9369
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	5.5	0.9427
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	7.4	0.9361
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	7.5	0.9362
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	10.5	0.9157
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	11.5	0.8524
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	11.8	0.9292

Compare expression of checked genes

Lus10027239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.