Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 245 / 6e-81 Protein of unknown function, DUF617 (.1) AT3G25640 199 / 3e-63 Protein of unknown function, DUF617 (.1) AT2G41660 168 / 1e-50 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G06990 148 / 2e-43 Protein of unknown function, DUF617 (.1) AT2G37880 146 / 1e-42 Protein of unknown function, DUF617 (.1) AT4G39610 144 / 5e-42 Protein of unknown function, DUF617 (.1) AT5G42680 137 / 2e-39 Protein of unknown function, DUF617 (.1.2) AT2G21990 128 / 7e-36 Protein of unknown function, DUF617 (.1) AT1G21050 119 / 3e-32 Protein of unknown function, DUF617 (.1) AT5G65340 107 / 7e-28 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038951 [exp] 261 / 2e-89 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 249 / 7e-83 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 232 / 3e-76 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 200 / 2e-63 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 199 / 8e-63 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 185 / 4e-57 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 183 / 5e-56 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 148 / 1e-42 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 144 / 8e-42 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053000 [exp] 268 / 2e-90 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 267 / 3e-90 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 212 / 3e-68 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 208 / 8e-67 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 182 / 2e-56 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 176 / 2e-54 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 149 / 7e-44 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 145 / 3e-42 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 141 / 4e-41 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.014G035000 [exp] 140 / 9e-41 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10027241 pacid=23145420 polypeptide=Lus10027241 locus=Lus10027241.g ID=Lus10027241.BGIv1.0 annot-version=v1.0 ATGTCCACTCACAACCTTTCCTCCACTTCCAAACGCCATTTCCACTGGACCACCAAAGTCGCCACCGACGACGACGAAACACCTTCCTCATCCTCCGCCA CTGCCTCCGGTGGCGGAGGCCCATATCTCAAGCCTTCCCCTTCCTTCACCGCCAGAGAACAACAACCCACAAAAAGGACTATCCCGATCGCTGCCACCAC CCCGAGGAAAAGGCTCCCGGCAGTCGCCGTCGCTAGGCTCAGATCAGTCTTCTCCGGCGGAAGAAACCGGGTCGGATCCGGTGGACTCGGAAACCGGGTC GCGGGAACCCTGTTCGGATCCCGTCAAGGACACGTCCATTTCGCTTTCCAGAGAGATCCCAGTTCGCCACCGGCGTTTCTGATAGAATTAGCGACTCCGA TCAGCCAGCTAGTGAAGGAGATGGCGTCCGGGTTGGTTAGGATCGCTCTGGAATGCGACGGCGGCAAGAAACAGAGTAGCAATAATAAAAACAGAGCATC TTCTTGTTCTTCAAGTAGGTTGCTGGAGGAGACCAATTGGAGGGCGTACTGCAACGGGAAGAAGTGCGGTATGGCGGCGAGGAAATTAGAGTGTGGTTCG AGGGAGATTAAGCTGCTGAAGAGCTTGGAGATGGTTTCCATGGGCGCCGGGGTTCTGCCGAGCTACGGCGGCGGAGGAGGGAGGGAGGAGATTATGTACA TGAGGGCGAAGTTTGAGAGGGTCGTCGGGTCGAGAGATTCGGAGGCTTTCTACATGATGAATCCTGATTGTAATGGTGCTCCTGAGCTTAGCATCTATCT TCTCAGAGTTTGA
AA sequence Show only first row Show all	>Lus10027241 pacid=23145420 polypeptide=Lus10027241 locus=Lus10027241.g ID=Lus10027241.BGIv1.0 annot-version=v1.0 MSTHNLSSTSKRHFHWTTKVATDDDETPSSSSATASGGGGPYLKPSPSFTAREQQPTKRTIPIAATTPRKRLPAVAVARLRSVFSGGRNRVGSGGLGNRV AGTLFGSRQGHVHFAFQRDPSSPPAFLIELATPISQLVKEMASGLVRIALECDGGKKQSSNNKNRASSCSSSRLLEETNWRAYCNGKKCGMAARKLECGS REIKLLKSLEMVSMGAGVLPSYGGGGGREEIMYMRAKFERVVGSRDSEAFYMMNPDCNGAPELSIYLLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23100			Protein of unknown function, D...		Lus10027241 [exp]	0	1
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	4.2	0.8419
AT5G62960			unknown protein		Lus10042109 [exp]	6.8	0.8096
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	9.0	0.7961
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10021999 [exp]	9.4	0.7777
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	13.0	0.7583
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	26.8	0.7516
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	28.0	0.7512
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	30.6	0.7492
					Lus10024213 [exp]	31.0	0.7240
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	32.1	0.7177

Compare expression of checked genes

Lus10027241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.