Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18530 183 / 6e-60 EF hand calcium-binding protein family (.1) AT3G25600 170 / 5e-55 Calcium-binding EF-hand family protein (.1) AT1G32250 100 / 3e-27 Calcium-binding EF-hand family protein (.1) AT3G03000 98 / 2e-26 EF hand calcium-binding protein family (.1) AT4G14640 88 / 1e-22 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G56800 85 / 1e-21 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 85 / 1e-21 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 85 / 1e-21 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT1G66410 85 / 2e-21 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 85 / 2e-21 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017900 [exp] 180 / 9e-59 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10030986 [exp] 109 / 1e-30 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10004610 [exp] 104 / 1e-28 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1) Lus10039391 [exp] 87 / 4e-22 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10004539 [exp] 85 / 5e-22 AT3G03000 164 / 2e-53 EF hand calcium-binding protein family (.1) Lus10041288 [exp] 85 / 2e-21 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 85 / 2e-21 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 85 / 2e-21 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 85 / 2e-21 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052600 [exp] 185 / 8e-61 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.010G132800 [exp] 185 / 1e-60 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.003G095700 [exp] 112 / 3e-32 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.001G138000 [exp] 111 / 1e-31 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.016G024700 [exp] 85 / 2e-21 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 85 / 2e-21 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 85 / 2e-21 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 85 / 5e-21 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.010G080900 [exp] 82 / 3e-20 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 81 / 5e-20 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027243 pacid=23145430 polypeptide=Lus10027243 locus=Lus10027243.g ID=Lus10027243.BGIv1.0 annot-version=v1.0 ATGACGACGCTACGGATGAGCCAGCTGTGCGACATATTCGACAGGTTCGACATGGACTCGGACAGGAGTCTGACAGTGCGGGAGCTGGCGGGGTTGCTCC GGTCGTTAGGGTTGTCGGCCTCCGGCAACGAGATACACGACCTCCTGACGAACATGGACTCGAACGGGAACGGATTCGTCGAATTCGAGGAGCTGGTGGA GGCGATCTCCAACCAGATCGACGAGCAGACGCTGGTGAACCAGGAGCAACTGCTGGAGATCTTCCAGCTGTTCGATAGGGACGGGAACGGTGTGATAACG AAGGCGGAGCTCGCCGGTGGCTTGGCGAAGATGGGGCAGCCGCTGACGTGGAGGGAGCTGACGGAGATGATGATACAGGCGGATACCAACGGCGACGGCG TGATTAGCTTCACGGAGTTCTCGACCGTGATGGCTAGGTCAACGTTGGAGTCGCTAGGGATTGTGACTCCGGTGTGA
AA sequence Show only first row Show all	>Lus10027243 pacid=23145430 polypeptide=Lus10027243 locus=Lus10027243.g ID=Lus10027243.BGIv1.0 annot-version=v1.0 MTTLRMSQLCDIFDRFDMDSDRSLTVRELAGLLRSLGLSASGNEIHDLLTNMDSNGNGFVEFEELVEAISNQIDEQTLVNQEQLLEIFQLFDRDGNGVIT KAELAGGLAKMGQPLTWRELTEMMIQADTNGDGVISFTEFSTVMARSTLESLGIVTPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	2.0	0.8271
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	5.3	0.8307
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	8.9	0.7507
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	12.5	0.8079
					Lus10003030 [exp]	15.9	0.7405
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	16.4	0.7512
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	16.9	0.7721
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	28.5	0.7235
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	29.4	0.6725
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	29.4	0.6951

Compare expression of checked genes

Lus10027243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.