Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60400 63 / 1e-10 F-box/RNI-like superfamily protein (.1) AT5G41840 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G02930 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT1G16930 62 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66300 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78750 61 / 7e-10 F-box/RNI-like superfamily protein (.1) AT5G02920 59 / 8e-10 F-box/RNI-like superfamily protein (.1) AT3G28410 60 / 1e-09 F-box/RNI-like superfamily protein (.1) AT5G18780 59 / 3e-09 F-box/RNI-like superfamily protein (.1.2) AT1G78760 59 / 3e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006513 [exp] 370 / 5e-127 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 278 / 2e-88 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027245 [exp] 256 / 4e-83 ND / Lus10027258 [exp] 243 / 3e-78 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10029433 [exp] 207 / 5e-63 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10038935 [exp] 202 / 1e-61 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 200 / 3e-61 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10024702 [exp] 196 / 9e-60 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10026868 [exp] 184 / 5e-56 ND 41 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 105 / 3e-25 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 96 / 5e-22 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 87 / 1e-18 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 69 / 2e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104200 [exp] 68 / 3e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 66 / 1e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 64 / 4e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 60 / 1e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.015G002001 [exp] 57 / 5e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G395000 [exp] 55 / 7e-08 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027244 pacid=23145543 polypeptide=Lus10027244 locus=Lus10027244.g ID=Lus10027244.BGIv1.0 annot-version=v1.0 ATGGCGAGCGGAAGCAAGAGGGTTCATAGTAGAATTGACAGATTGAGCGGTCTTCCTGACGGTATTTTGCATCACATCCTTTCCTTCCTTGACACTAAAT CTTCAGTTAAAACCTGCGTATTGTCTAGGAGGTGGATATCTTTATGGAAATATGTTCCCGTTCTCAATTTCAAACATAGCTTCTTTGAGTCTCATTCGAG GTTCAAGCGGTATGTAAACCAAGCTCTGTCCCTCCGTTCTGACAGCAGTAGGGTCACTAGGGTTACAGTGGATGTCCGGGTAGAACATGGGATGGATCTG TTGGATAGGATCACCAAATATGCCGCTTCCCATGGAGTTGAAGAGCTATTAATAATTTGTTGTTCCAAATTTCTGAAGCCGGTTGGATTAGTATCCTCCT GTTATCAATCTCTGAAAGTGCTTGAGCTAGAGCAGGTTGACATTGACAAGACTGATGTTGGATTGTTTTCTGGTTTCCAACTGCTTGAATCTCTTACTCT GACTCACTGCAACTTTGCCTTTTCGGAAGATGCGGCACACAATGACCCTTTTGCCAACTTCCTCAAATTGGAAACCCTGAAACTGATCAGGTGCTTTTAT CCCCGTCATATACCCGGGGCTCCTGCTCTAATAGTAACCGGCCCCAAACTACTTAGCTTGGAGATCGTTTGGCCAAGTTTCGACCGCCTTCAAATCAATG CTCCGAAGCTACAATCTCTCACTCTCAACTATGAAATTTCATATGCCACAGTAATAGAAGTGTCCAAGTCAAATCTTTCTTCCCTCAGCCGTGCAAACAT CACCTTGTTTAGGGTTGTGCACAATTATGTTGGTGATAGCAATGGTACCGTGATGCAACTGTTGGTCGAGCAGTGTGCAAACTTGTTCAAGATTCTGCAT AATGTACAAGCGCTCGATCTGCGTGTCGGAAGCTTCAAGTTAGCTCAGGCGCTCAGCTCCTTTCCGGAGACTAGTCATTACTCCGCCGATCAAGCAACAG TCATCGGTCTCTCGCTGTACGGAAAAGCTATTGATTCTACAGAAAGGGAGAGGCGGAGCTCGCTAGGGTTAGATTGGGAGCAGCAAGTAGAGCAAGTTCT AACCCGCCGTTCTGCCGGTACTAGCGTCAGCAGGGTTAAAATAGAGGCAAAACAGCGGCTTACTTTGTTGAGTAGCAGGGTGGAGAAATAA
AA sequence Show only first row Show all	>Lus10027244 pacid=23145543 polypeptide=Lus10027244 locus=Lus10027244.g ID=Lus10027244.BGIv1.0 annot-version=v1.0 MASGSKRVHSRIDRLSGLPDGILHHILSFLDTKSSVKTCVLSRRWISLWKYVPVLNFKHSFFESHSRFKRYVNQALSLRSDSSRVTRVTVDVRVEHGMDL LDRITKYAASHGVEELLIICCSKFLKPVGLVSSCYQSLKVLELEQVDIDKTDVGLFSGFQLLESLTLTHCNFAFSEDAAHNDPFANFLKLETLKLIRCFY PRHIPGAPALIVTGPKLLSLEIVWPSFDRLQINAPKLQSLTLNYEISYATVIEVSKSNLSSLSRANITLFRVVHNYVGDSNGTVMQLLVEQCANLFKILH NVQALDLRVGSFKLAQALSSFPETSHYSADQATVIGLSLYGKAIDSTERERRSSLGLDWEQQVEQVLTRRSAGTSVSRVKIEAKQRLTLLSSRVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10027244 [exp]	0	1
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	14.4	0.6014
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	16.0	0.6034
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	32.2	0.5768
AT4G00525			unknown protein		Lus10037852 [exp]	32.2	0.5766
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	51.1	0.5218
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	58.0	0.5508
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10018288 [exp]	73.9	0.5360
AT5G44450			methyltransferases (.1)		Lus10042846 [exp]	133.0	0.4726

Compare expression of checked genes

Lus10027244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.