Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027244 [exp] 256 / 6e-83 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 218 / 2e-68 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10026868 [exp] 170 / 1e-51 ND 41 / 6e-04 Lus10038470 [exp] 145 / 1e-41 ND / Lus10038468 [exp] 145 / 1e-41 ND / Lus10038967 [exp] 149 / 1e-40 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10038935 [exp] 144 / 2e-40 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 132 / 2e-36 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10035564 [exp] 130 / 2e-35 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027245 pacid=23145511 polypeptide=Lus10027245 locus=Lus10027245.g ID=Lus10027245.BGIv1.0 annot-version=v1.0 ATGCTCCCAACCTCCAATCTTACGGTTAATTCTTCATATTGTGAGCTAACAGAAGTGTTAAAGTCGGATCTTCCTTCCCTTAATCGTGCAAACATCAAGC TGTTTGGTTGCAAGTATTTGTTGTTTGACACTTCTTCTAGTGACAATGAAGTCAGCAAGCAACTATTGCTCGAGCGGTGTGCAAAGTTGTTCAAGGTTCT GCATAATGTACAAGCACTCAATCTGGAGGTCGAAACCTTTGAGGTGGTTGGATTAGTATCCTCCTGTTATCAATCTCTGAAAGTTCTTGAGCTAGACAGA GTTGAAATTGATAACACTGATGTTGGATTATTTTCTCGTTTCCAACTGCTTGAATCTCTTACTCTGACTCGCTGCGACCTTGCCTATTCTAAGGATGCGG CACACAATGATGCTTTTGCCAACTTCCCCAGATTGGAAACCCTAAAACTGATCCGATGCTTTCATCCCCGTGATATGCACGAGGCTTCTGTTCTAATAAT TACCGGCCCCAAACTACTTAGCTTGGAGATCGTTTGGTCACTATTCGACCGTCTTCAAATCAATGCTCCCAAGCTCCAATCTTTCAAGCTTAAGTGTGCT ATTACATATGACACAATGATAGAAGTGTCCAAGTCAAATCTTCCTTCCCTTTGCCGTGCAAACATCAAGTTGTTGTTGTTATTGGACAATTATTCTACTG ACGCTAGTGCCTCGAAGCAAGCGCGGTTCGAGCAGTGTGCAAACTTGTTCAAGATTCTGCACAATGTACAAGCTCTCAATCTGCATGTCAAAATCCCGAA GACCAATTTCTCGAGTTCACAAGTGTATCGGGATGCCGGTACAAGAAAAATTGAACAGGGGTTATTACTGGTTGAGAATTATGAGCTTTTTGTTATAATG CAGGGAGTGGGTAACAATGTGTTTGTTGTGTTAGAATGA
AA sequence Show only first row Show all	>Lus10027245 pacid=23145511 polypeptide=Lus10027245 locus=Lus10027245.g ID=Lus10027245.BGIv1.0 annot-version=v1.0 MLPTSNLTVNSSYCELTEVLKSDLPSLNRANIKLFGCKYLLFDTSSSDNEVSKQLLLERCAKLFKVLHNVQALNLEVETFEVVGLVSSCYQSLKVLELDR VEIDNTDVGLFSRFQLLESLTLTRCDLAYSKDAAHNDAFANFPRLETLKLIRCFHPRDMHEASVLIITGPKLLSLEIVWSLFDRLQINAPKLQSFKLKCA ITYDTMIEVSKSNLPSLCRANIKLLLLLDNYSTDASASKQARFEQCANLFKILHNVQALNLHVKIPKTNFSSSQVYRDAGTRKIEQGLLLVENYELFVIM QGVGNNVFVVLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027245 [exp]	0	1
					Lus10038468 [exp]	4.1	0.6770
AT2G40070			unknown protein		Lus10002493 [exp]	21.5	0.6196
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	23.9	0.6717
AT1G05430			unknown protein		Lus10006108 [exp]	27.7	0.6493
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10004189 [exp]	27.7	0.5649
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	28.8	0.6669
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	32.2	0.6426
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	40.6	0.6471
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	40.6	0.6204
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	47.4	0.6144

Compare expression of checked genes

Lus10027245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.